Atomistry » Chlorine » PDB 2ii3-2iwk » 2is9
Atomistry »
  Chlorine »
    PDB 2ii3-2iwk »
      2is9 »

Chlorine in PDB 2is9: Structure of Yeast Dcn-1

Protein crystallography data

The structure of Structure of Yeast Dcn-1, PDB code: 2is9 was solved by X.Yang, J.Zhou, L.Sun, Z.Wei, J.Gao, W.Gong, R.M.Xu, Z.Rao, Y.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.92
Space group I 41
Cell size a, b, c (Å), α, β, γ (°) 81.107, 81.107, 106.023, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 24

Other elements in 2is9:

The structure of Structure of Yeast Dcn-1 also contains other interesting chemical elements:

Platinum (Pt) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Yeast Dcn-1 (pdb code 2is9). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of Yeast Dcn-1, PDB code: 2is9:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2is9

Go back to Chlorine Binding Sites List in 2is9
Chlorine binding site 1 out of 4 in the Structure of Yeast Dcn-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Yeast Dcn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1110

b:0.0
occ:1.00
PT A:PT1109 3.2 0.3 1.0
CL A:CL1118 4.2 0.1 1.0
SD A:MET230 4.8 37.9 1.0

Chlorine binding site 2 out of 4 in 2is9

Go back to Chlorine Binding Sites List in 2is9
Chlorine binding site 2 out of 4 in the Structure of Yeast Dcn-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Yeast Dcn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1111

b:0.7
occ:1.00
O A:HOH1201 3.7 34.2 1.0
CB A:LEU233 3.7 22.9 1.0
O A:ARG229 4.2 23.4 1.0
CA A:LEU233 4.4 22.4 1.0
N A:LEU233 4.4 22.2 1.0
PT A:PT1109 4.5 0.3 1.0
CG A:LEU233 4.5 25.3 1.0
CD1 A:LEU233 4.5 27.9 1.0
CD2 A:LEU233 4.6 26.6 1.0

Chlorine binding site 3 out of 4 in 2is9

Go back to Chlorine Binding Sites List in 2is9
Chlorine binding site 3 out of 4 in the Structure of Yeast Dcn-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Yeast Dcn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1112

b:1.0
occ:1.00
OD1 A:ASP226 3.2 26.5 1.0
CA A:ASP226 3.6 24.7 1.0
CG A:ASP226 4.0 26.5 1.0
CB A:ASP226 4.0 24.9 1.0
PT A:PT1109 4.2 0.3 1.0
CD A:ARG229 4.3 35.9 1.0
CB A:ARG229 4.3 25.7 1.0
O A:ASP226 4.3 24.4 1.0
N A:ASP226 4.4 25.0 1.0
CG A:MET230 4.4 28.1 1.0
O A:HOH1199 4.4 43.4 1.0
C A:ASP226 4.5 24.0 1.0
O A:LYS225 4.6 24.4 1.0
SD A:MET230 4.8 37.9 1.0
C A:LYS225 4.8 25.5 1.0
CG A:ARG229 4.8 29.6 1.0
CL A:CL1118 4.9 0.1 1.0

Chlorine binding site 4 out of 4 in 2is9

Go back to Chlorine Binding Sites List in 2is9
Chlorine binding site 4 out of 4 in the Structure of Yeast Dcn-1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Yeast Dcn-1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1118

b:0.1
occ:1.00
O A:HOH1199 2.7 43.4 1.0
SD A:MET230 3.5 37.9 1.0
PT A:PT1109 3.7 0.3 1.0
CL A:CL1110 4.2 0.0 1.0
CE A:MET230 4.4 39.1 1.0
O A:HOH1146 4.4 35.3 1.0
CG A:MET230 4.5 28.1 1.0
OD1 A:ASP226 4.7 26.5 1.0
CL A:CL1112 4.9 1.0 1.0

Reference:

X.Yang, J.Zhou, L.Sun, Z.Wei, J.Gao, W.Gong, R.M.Xu, Z.Rao, Y.Liu. Structural Basis For the Function of Dcn-1 in Protein Neddylation. J.Biol.Chem. V. 282 24490 2007.
ISSN: ISSN 0021-9258
PubMed: 17597076
DOI: 10.1074/JBC.C700038200
Page generated: Sat Dec 12 09:09:06 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy