Atomistry » Chlorine » PDB 2iws-2j62 » 2j07
Atomistry »
  Chlorine »
    PDB 2iws-2j62 »
      2j07 »

Chlorine in PDB 2j07: Thermus Dna Photolyase with 8-Hdf Antenna Chromophore

Enzymatic activity of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore

All present enzymatic activity of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore:
4.1.99.3;

Protein crystallography data

The structure of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore, PDB code: 2j07 was solved by T.Klar, G.Kaiser, U.Hennecke, T.Carell, A.Batschauer, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 18.86 / 1.95
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 112.620, 112.620, 140.262, 90.00, 90.00, 120.00
R / Rfree (%) 16.9 / 21.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore (pdb code 2j07). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore, PDB code: 2j07:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2j07

Go back to Chlorine Binding Sites List in 2j07
Chlorine binding site 1 out of 3 in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1423

b:86.8
occ:1.00
O A:HOH2312 2.2 70.7 1.0
NH1 A:ARG46 3.1 56.3 1.0
O A:HOH2035 3.2 56.5 1.0
NH2 A:ARG336 3.7 61.1 1.0
O A:HOH2309 3.8 72.0 1.0
NE A:ARG336 3.9 60.0 1.0
O A:HOH2040 3.9 56.0 1.0
NE2 A:HIS337 3.9 62.4 1.0
OG1 A:THR42 4.0 42.4 1.0
CZ A:ARG46 4.1 48.9 1.0
CD2 A:HIS337 4.1 60.1 1.0
NH2 A:ARG46 4.2 42.8 1.0
CZ A:ARG336 4.3 61.6 1.0
CB A:THR42 4.3 43.1 1.0
O A:HOH2034 4.8 55.4 1.0

Chlorine binding site 2 out of 3 in 2j07

Go back to Chlorine Binding Sites List in 2j07
Chlorine binding site 2 out of 3 in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1424

b:85.1
occ:1.00
O A:HOH2144 2.7 66.3 1.0
O A:HOH2148 2.9 43.2 1.0
O A:HOH2147 3.0 59.8 1.0
ND1 A:HIS117 3.2 41.4 1.0
CE1 A:HIS117 4.0 41.6 1.0
CA A:HIS117 4.1 33.0 1.0
CG A:HIS117 4.2 34.8 1.0
O A:LEU116 4.3 39.6 1.0
CB A:HIS117 4.4 33.6 1.0
N A:LEU118 4.6 31.6 1.0
C A:HIS117 4.9 34.0 1.0
O A:HOH2032 4.9 62.3 1.0
N A:HIS117 5.0 33.1 1.0

Chlorine binding site 3 out of 3 in 2j07

Go back to Chlorine Binding Sites List in 2j07
Chlorine binding site 3 out of 3 in the Thermus Dna Photolyase with 8-Hdf Antenna Chromophore


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Thermus Dna Photolyase with 8-Hdf Antenna Chromophore within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1425

b:74.8
occ:1.00
O A:PRO148 2.8 34.7 1.0
C A:PRO148 3.9 36.2 1.0
CD2 A:LEU150 4.1 37.0 1.0
CD A:PRO148 4.2 41.0 1.0
CB A:PRO148 4.3 38.4 1.0
CG A:PRO148 4.4 40.9 1.0
N A:PRO148 4.4 39.8 1.0
CA A:PRO148 4.5 39.8 1.0
CG A:LEU150 4.6 34.7 1.0
C A:PRO149 4.7 34.5 1.0
NH1 A:ARG224 4.7 34.9 1.0
CZ A:ARG224 4.8 36.7 1.0
O A:HOH2175 4.8 44.6 1.0
O A:PRO149 4.8 33.4 1.0
N A:PRO149 4.9 36.0 1.0
NH2 A:ARG224 4.9 31.1 1.0
N A:LEU150 4.9 33.7 1.0
CB A:ALA147 5.0 40.1 1.0
CA A:PRO149 5.0 35.5 1.0

Reference:

T.Klar, G.Kaiser, U.Hennecke, T.Carell, A.Batschauer, L.-O.Essen. Natural and Non-Natural Antenna Chromophores in the Dna Photolyase From Thermus Thermophilus Chembiochem V. 7 1798 2006.
ISSN: ISSN 1439-4227
PubMed: 17051659
DOI: 10.1002/CBIC.200600206
Page generated: Sat Jul 20 08:37:11 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy