Chlorine in PDB 2j9e: Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake

The structure of Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake, PDB code: 2j9e was solved by O.Yildiz, C.Kalthoff, S.Raunser, W.Kuehlbrandt, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	19.89 / 1.62
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	60.400, 77.800, 82.200, 90.00, 90.00, 90.00
R / Rfree (%)	14.2 / 19

The structure of Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake also contains other interesting chemical elements:

Magnesium	(Mg)	1 atom
Sodium	(Na)	1 atom

The binding sites of Chlorine atom in the Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake (pdb code 2j9e). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake, PDB code: 2j9e:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in the Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1117 b:17.9 occ:1.00 NZ B:LYS3 3.1 19.9 1.0 NZ A:LYS3 3.1 23.3 1.0 NZ C:LYS3 3.1 20.1 1.0 O C:HOH2010 3.4 61.8 1.0 CE A:LYS3 3.6 23.5 1.0 CE B:LYS3 3.7 22.9 1.0 CD1 A:ILE94 3.9 19.1 1.0 CE C:LYS3 3.9 26.1 1.0 CD1 C:ILE94 3.9 22.1 1.0 CD1 B:ILE94 4.0 20.2 1.0 CG2 A:ILE94 4.2 16.2 1.0 CG2 C:ILE94 4.2 16.9 1.0 CD C:LYS3 4.3 23.3 1.0 CG2 B:ILE94 4.3 15.1 1.0 OE2 A:GLU5 4.3 24.0 0.5 O B:HOH2011 4.4 26.2 1.0 O A:HOH2005 4.4 39.6 1.0 OE2 B:GLU5 4.5 25.3 0.5 CL C:CL1117 4.6 42.5 1.0 CG1 C:ILE94 4.8 19.1 1.0 CG1 A:ILE94 4.8 16.3 1.0 OE1 A:GLU5 4.8 21.5 0.5 OE1 B:GLU5 4.8 24.0 0.5 CB C:ILE94 4.9 14.4 1.0 CB A:ILE94 4.9 15.9 1.0 CG1 B:ILE94 4.9 17.9 1.0 OE1 C:GLU5 4.9 22.4 1.0 OE2 B:GLU5 4.9 20.9 0.5 OE1 A:GLU5 5.0 24.4 0.5 CB B:ILE94 5.0 13.8 1.0

Chlorine binding site 2 out of 4 in the Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1118 b:88.8 occ:1.00 NH2 B:ARG82 3.2 30.2 1.0 CG A:ARG103 3.4 24.5 1.0 NH1 A:ARG103 3.5 36.2 1.0 CD A:ARG103 3.9 26.9 1.0 O A:ARG103 3.9 24.3 1.0 CA B:GLY84 4.2 30.5 1.0 O B:GLY84 4.3 34.1 1.0 CZ A:ARG103 4.5 33.6 1.0 CG2 A:THR104 4.5 26.1 1.0 CZ B:ARG82 4.5 30.5 1.0 NE A:ARG103 4.6 29.8 1.0 C A:ARG103 4.6 21.6 1.0 C B:GLY84 4.7 32.4 1.0 CB A:ARG103 4.8 23.2 1.0

Chlorine binding site 3 out of 4 in the Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1117 b:42.5 occ:1.00 O C:HOH2010 2.6 61.8 1.0 O A:HOH2005 2.9 39.6 1.0 NZ C:LYS60 3.1 23.4 1.0 O B:HOH2011 3.2 26.2 1.0 NZ C:LYS3 3.2 20.1 1.0 OE1 C:GLU62 3.4 35.9 1.0 CD C:GLU62 3.5 29.1 1.0 OE2 C:GLU5 3.6 25.5 1.0 CD C:GLU5 3.6 21.9 1.0 CE C:LYS3 3.7 26.1 1.0 OE1 C:GLU5 3.8 22.4 1.0 NZ B:LYS3 3.8 19.9 1.0 NZ A:LYS60 3.9 28.0 1.0 CD C:LYS60 3.9 21.1 1.0 OE2 C:GLU62 3.9 28.4 1.0 CE C:LYS60 4.0 21.6 1.0 OE2 B:GLU62 4.1 25.2 1.0 CG C:GLU62 4.1 20.6 1.0 CG C:GLU5 4.3 16.8 1.0 CL A:CL1117 4.6 17.9 1.0 CD B:GLU62 4.7 24.0 1.0 OE1 B:GLU62 4.7 21.6 1.0 OE1 A:GLU5 4.8 24.4 0.5 CB C:GLU5 5.0 17.8 1.0 O B:HOH2045 5.0 38.2 1.0

Chlorine binding site 4 out of 4 in the Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1118 b:56.3 occ:1.00 NH1 B:ARG103 3.1 27.1 1.0 O C:GLY84 3.3 22.8 1.0 CG B:ARG103 3.5 18.0 1.0 CD B:ARG103 3.5 19.7 1.0 O C:HOH2111 3.7 53.4 1.0 NH2 C:ARG82 3.8 27.2 1.0 CA C:GLY84 3.9 19.8 1.0 C C:GLY84 3.9 20.1 1.0 CZ B:ARG103 4.1 24.0 1.0 NE B:ARG103 4.3 19.0 1.0 O C:HOH2117 4.5 34.8 1.0 O B:ARG103 4.7 19.2 1.0 O B:HOH2118 4.8 50.6 1.0 CG2 B:THR104 4.9 22.4 1.0 CB B:ARG103 5.0 18.3 1.0

O.Yildiz, C.Kalthoff, S.Raunser, W.Kuhlbrandt. Structure of GLNK1 with Bound Effectors Indicates Regulatory Mechanism For Ammonia Uptake. Embo J. V. 26 589 2007.
ISSN: ISSN 0261-4189
PubMed: 17203075
DOI: 10.1038/SJ.EMBOJ.7601492