Chlorine in PDB 2jiv: Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272
Enzymatic activity of Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272
All present enzymatic activity of Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272:
2.7.1.112;
2.7.10.1;
Protein crystallography data
The structure of Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272, PDB code: 2jiv
was solved by
C.-H.Yun,
K.E.Mengwasser,
A.V.Toms,
M.S.Woo,
H.Greulich,
K.-K.Wong,
M.Meyerson,
M.J.Eck,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
25.00 /
3.5
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
56.087,
98.989,
73.326,
90.00,
109.94,
90.00
|
R / Rfree (%)
|
25.1 /
28.4
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272
(pdb code 2jiv). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272, PDB code: 2jiv:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 2jiv
Go back to
Chlorine Binding Sites List in 2jiv
Chlorine binding site 1 out
of 4 in the Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1797
b:33.8
occ:1.00
|
CLA
|
A:HKI1797
|
0.0
|
33.8
|
1.0
|
CBJ
|
A:HKI1797
|
1.7
|
33.0
|
1.0
|
O
|
A:LEU788
|
2.2
|
43.1
|
1.0
|
CBN
|
A:HKI1797
|
2.7
|
33.1
|
1.0
|
CAR
|
A:HKI1797
|
2.7
|
33.3
|
1.0
|
OBE
|
A:HKI1797
|
2.9
|
32.7
|
1.0
|
N
|
A:ILE744
|
3.2
|
44.6
|
1.0
|
C
|
A:LEU788
|
3.3
|
43.7
|
1.0
|
CA
|
A:ILE744
|
3.4
|
42.9
|
1.0
|
N
|
A:LYS745
|
3.6
|
44.1
|
1.0
|
C
|
A:ILE744
|
3.6
|
43.2
|
1.0
|
C
|
A:ALA743
|
3.8
|
45.0
|
1.0
|
CB
|
A:ALA743
|
3.9
|
41.4
|
1.0
|
CA
|
A:ILE789
|
3.9
|
48.5
|
1.0
|
N
|
A:ILE789
|
4.0
|
45.6
|
1.0
|
CAP
|
A:HKI1797
|
4.0
|
33.6
|
1.0
|
CBI
|
A:HKI1797
|
4.0
|
33.5
|
1.0
|
C
|
A:ILE789
|
4.1
|
49.7
|
1.0
|
N
|
A:MET790
|
4.1
|
51.0
|
1.0
|
CB
|
A:LYS745
|
4.2
|
44.7
|
1.0
|
CB
|
A:LEU788
|
4.2
|
40.7
|
1.0
|
NAD
|
A:HKI1797
|
4.2
|
36.6
|
1.0
|
CAV
|
A:HKI1797
|
4.3
|
31.2
|
1.0
|
CA
|
A:LEU788
|
4.4
|
42.3
|
1.0
|
O
|
A:ILE744
|
4.4
|
41.8
|
1.0
|
O
|
A:ALA743
|
4.4
|
46.8
|
1.0
|
CA
|
A:ALA743
|
4.5
|
44.4
|
1.0
|
CAJ
|
A:HKI1797
|
4.5
|
36.4
|
1.0
|
CA
|
A:LYS745
|
4.5
|
44.8
|
1.0
|
CAO
|
A:HKI1797
|
4.5
|
33.5
|
1.0
|
CB
|
A:MET790
|
4.6
|
53.8
|
1.0
|
O
|
A:ILE789
|
4.7
|
50.3
|
1.0
|
CG
|
A:MET790
|
4.8
|
57.7
|
1.0
|
CB
|
A:ILE744
|
4.9
|
42.7
|
1.0
|
CA
|
A:MET790
|
4.9
|
52.4
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 2jiv
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Chlorine Binding Sites List in 2jiv
Chlorine binding site 2 out
of 4 in the Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1797
b:31.4
occ:1.00
|
CLA
|
B:HKI1797
|
0.0
|
31.4
|
1.0
|
CBJ
|
B:HKI1797
|
1.7
|
30.6
|
1.0
|
CBN
|
B:HKI1797
|
2.7
|
30.3
|
1.0
|
CAR
|
B:HKI1797
|
2.7
|
30.6
|
1.0
|
OBE
|
B:HKI1797
|
3.0
|
29.9
|
1.0
|
O
|
B:ALA743
|
3.0
|
50.4
|
1.0
|
C
|
B:ILE789
|
3.1
|
49.3
|
1.0
|
O
|
B:LEU788
|
3.2
|
51.6
|
1.0
|
CA
|
B:ILE789
|
3.3
|
48.9
|
1.0
|
N
|
B:MET790
|
3.4
|
49.6
|
1.0
|
O
|
B:ILE789
|
3.5
|
50.0
|
1.0
|
C
|
B:ALA743
|
3.6
|
47.5
|
1.0
|
C
|
B:LEU788
|
3.6
|
51.4
|
1.0
|
CB
|
B:MET790
|
3.6
|
51.2
|
1.0
|
NAD
|
B:HKI1797
|
3.6
|
31.8
|
1.0
|
N
|
B:ILE789
|
3.7
|
50.1
|
1.0
|
CAP
|
B:HKI1797
|
4.0
|
30.9
|
1.0
|
CAJ
|
B:HKI1797
|
4.0
|
31.7
|
1.0
|
CBI
|
B:HKI1797
|
4.0
|
30.5
|
1.0
|
CB
|
B:LYS745
|
4.1
|
41.4
|
1.0
|
CA
|
B:MET790
|
4.1
|
49.6
|
1.0
|
N
|
B:ILE744
|
4.1
|
46.5
|
1.0
|
CG
|
B:MET790
|
4.1
|
53.8
|
1.0
|
N
|
B:LYS745
|
4.2
|
43.6
|
1.0
|
C
|
B:ILE744
|
4.2
|
44.5
|
1.0
|
CB
|
B:ALA743
|
4.2
|
45.7
|
1.0
|
CA
|
B:ILE744
|
4.2
|
44.6
|
1.0
|
CAV
|
B:HKI1797
|
4.3
|
30.0
|
1.0
|
CA
|
B:ALA743
|
4.4
|
46.5
|
1.0
|
CAO
|
B:HKI1797
|
4.5
|
30.9
|
1.0
|
CB
|
B:ILE789
|
4.7
|
47.2
|
1.0
|
O
|
B:ILE744
|
4.7
|
44.6
|
1.0
|
O
|
B:MET790
|
4.7
|
48.1
|
1.0
|
N
|
B:ALA743
|
4.7
|
44.8
|
1.0
|
CB
|
B:LEU788
|
4.7
|
50.6
|
1.0
|
CA
|
B:LYS745
|
4.8
|
43.0
|
1.0
|
CA
|
B:LEU788
|
4.8
|
51.4
|
1.0
|
CBL
|
B:HKI1797
|
4.8
|
31.4
|
1.0
|
C
|
B:MET790
|
4.9
|
48.7
|
1.0
|
CAN
|
B:HKI1797
|
4.9
|
30.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 2jiv
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Chlorine Binding Sites List in 2jiv
Chlorine binding site 3 out
of 4 in the Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1984
b:12.1
occ:1.00
|
CE1
|
B:HIS850
|
3.8
|
42.9
|
1.0
|
NZ
|
B:LYS846
|
4.1
|
48.4
|
1.0
|
NE
|
A:ARG776
|
4.3
|
52.2
|
1.0
|
CZ
|
A:ARG776
|
4.5
|
53.0
|
1.0
|
CA
|
B:PRO772
|
4.6
|
44.9
|
1.0
|
ND1
|
B:HIS850
|
4.6
|
42.2
|
1.0
|
CD
|
A:ARG776
|
4.7
|
49.8
|
1.0
|
NE2
|
B:HIS850
|
4.7
|
42.7
|
1.0
|
NH2
|
A:ARG776
|
4.7
|
53.6
|
1.0
|
CD
|
B:LYS846
|
4.8
|
47.9
|
1.0
|
NZ
|
B:LYS852
|
4.8
|
41.9
|
1.0
|
O
|
B:PRO772
|
4.8
|
43.8
|
1.0
|
CE
|
B:LYS852
|
4.8
|
39.3
|
1.0
|
CE
|
B:LYS846
|
4.9
|
47.7
|
1.0
|
CB
|
B:PRO772
|
4.9
|
46.1
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 2jiv
Go back to
Chlorine Binding Sites List in 2jiv
Chlorine binding site 4 out
of 4 in the Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Egfr Kinase Domain T790M Mutation in Compex with Hki-272 within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1985
b:45.6
occ:1.00
|
NH1
|
B:ARG977
|
3.6
|
55.9
|
1.0
|
CZ
|
B:ARG977
|
4.8
|
57.0
|
1.0
|
|
Reference:
C.-H.Yun,
K.E.Mengwasser,
A.V.Toms,
M.S.Woo,
H.Greulich,
K.-K.Wong,
M.Meyerson,
M.J.Eck.
The T790M Mutation in Egfr Kinase Causes Drug Resistance By Increasing the Affinity For Atp. Proc.Natl.Acad.Sci.Usa V. 105 2070 2008.
ISSN: ISSN 0027-8424
PubMed: 18227510
DOI: 10.1073/PNAS.0709662105
Page generated: Sat Jul 20 08:54:09 2024
|