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Chlorine in PDB 2jlx: Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate

Enzymatic activity of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate

All present enzymatic activity of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate:
3.4.21.91;

Protein crystallography data

The structure of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate, PDB code: 2jlx was solved by D.H.Luo, T.Xu, R.P.Watson, D.S.Becker, A.Sampath, W.Jahnke, S.S.Yeong, C.H.Wang, S.P.Lim, S.G.Vasudevan, J.Lescar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 132.537, 105.207, 72.352, 90.00, 117.62, 90.00
R / Rfree (%) 19.565 / 24.506

Other elements in 2jlx:

The structure of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Vanadium (V) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate (pdb code 2jlx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate, PDB code: 2jlx:

Chlorine binding site 1 out of 1 in 2jlx

Go back to Chlorine Binding Sites List in 2jlx
Chlorine binding site 1 out of 1 in the Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1622

b:34.2
occ:1.00
O B:HOH2106 3.1 18.7 1.0
O2' B:ADP1619 3.2 46.0 1.0
CD B:ARG463 3.5 13.7 1.0
N B:ARG418 3.5 21.4 1.0
OD1 B:ASN416 3.7 20.5 1.0
CB B:ARG463 3.7 14.8 1.0
CA B:ASN416 3.7 20.8 1.0
CB B:ASN416 3.8 20.6 1.0
NE B:ARG463 3.9 10.8 1.0
CA B:ARG418 3.9 21.5 1.0
C B:ASN416 3.9 21.1 1.0
N B:PHE417 4.0 21.1 1.0
CG B:ARG418 4.1 24.8 1.0
C2' B:ADP1619 4.1 45.8 1.0
NH1 B:ARG418 4.1 36.2 1.0
CG B:ASN416 4.2 20.5 1.0
CG B:ARG463 4.2 13.6 1.0
O B:HOH2089 4.3 9.9 1.0
O B:ASN416 4.4 21.0 1.0
CB B:ARG418 4.5 22.0 1.0
CZ B:ARG418 4.7 36.0 1.0
O B:HOH2116 4.7 19.2 1.0
C B:PHE417 4.7 21.3 1.0
O B:ARG460 4.8 14.0 1.0
CA B:PHE417 4.9 21.2 1.0

Reference:

D.H.Luo, T.Xu, R.P.Watson, D.Scherer-Becker, A.Sampath, W.Jahnke, S.S.Yeong, C.H.Wang, S.P.Lim, A.Strongin, S.G.Vasudevan, J.Lescar. Insights Into Rna Unwinding and Atp Hydrolysis By the Flavivirus NS3 Protein. Embo J. V. 27 3209 2008.
ISSN: ISSN 0261-4189
PubMed: 19008861
DOI: 10.1038/EMBOJ.2008.232
Page generated: Wed Oct 28 10:40:39 2020

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