Atomistry » Chlorine » PDB 2jh6-2kmb » 2jlx
Atomistry »
  Chlorine »
    PDB 2jh6-2kmb »
      2jlx »

Chlorine in PDB 2jlx: Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate

Enzymatic activity of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate

All present enzymatic activity of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate:
3.4.21.91;

Protein crystallography data

The structure of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate, PDB code: 2jlx was solved by D.H.Luo, T.Xu, R.P.Watson, D.S.Becker, A.Sampath, W.Jahnke, S.S.Yeong, C.H.Wang, S.P.Lim, S.G.Vasudevan, J.Lescar, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.20
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 132.537, 105.207, 72.352, 90.00, 117.62, 90.00
R / Rfree (%) 19.565 / 24.506

Other elements in 2jlx:

The structure of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate also contains other interesting chemical elements:

Manganese (Mn) 2 atoms
Vanadium (V) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate (pdb code 2jlx). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate, PDB code: 2jlx:

Chlorine binding site 1 out of 1 in 2jlx

Go back to Chlorine Binding Sites List in 2jlx
Chlorine binding site 1 out of 1 in the Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Dengue Virus 4 NS3 Helicase in Complex with Ssrna and Adp- Vanadate within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1622

b:34.2
occ:1.00
 O B:HOH2106 3.1 18.7 1.0
O2' B:ADP1619 3.2 46.0 1.0
CD B:ARG463 3.5 13.7 1.0
N B:ARG418 3.5 21.4 1.0
OD1 B:ASN416 3.7 20.5 1.0
CB B:ARG463 3.7 14.8 1.0
CA B:ASN416 3.7 20.8 1.0
CB B:ASN416 3.8 20.6 1.0
NE B:ARG463 3.9 10.8 1.0
CA B:ARG418 3.9 21.5 1.0
C B:ASN416 3.9 21.1 1.0
N B:PHE417 4.0 21.1 1.0
CG B:ARG418 4.1 24.8 1.0
C2' B:ADP1619 4.1 45.8 1.0
NH1 B:ARG418 4.1 36.2 1.0
CG B:ASN416 4.2 20.5 1.0
CG B:ARG463 4.2 13.6 1.0
O B:HOH2089 4.3 9.9 1.0
O B:ASN416 4.4 21.0 1.0
CB B:ARG418 4.5 22.0 1.0
CZ B:ARG418 4.7 36.0 1.0
O B:HOH2116 4.7 19.2 1.0
C B:PHE417 4.7 21.3 1.0
O B:ARG460 4.8 14.0 1.0
CA B:PHE417 4.9 21.2 1.0

Reference:

D.H.Luo, T.Xu, R.P.Watson, D.Scherer-Becker, A.Sampath, W.Jahnke, S.S.Yeong, C.H.Wang, S.P.Lim, A.Strongin, S.G.Vasudevan, J.Lescar. Insights Into Rna Unwinding and Atp Hydrolysis By the Flavivirus NS3 Protein. Embo J. V. 27 3209 2008.
ISSN: ISSN 0261-4189
PubMed: 19008861
DOI: 10.1038/EMBOJ.2008.232
Page generated: Wed Oct 28 10:40:39 2020

Last articles

Xe in 6AYK
Xe in 6QII
Xe in 6ASM
Xe in 5NSW
Xe in 6FY9
Xe in 5O1K
Xe in 5O27
Xe in 5M69
Xe in 5KPU
Xe in 5I63
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy