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Chlorine in PDB 2o3o: Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis

Protein crystallography data

The structure of Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis, PDB code: 2o3o was solved by E.Santelli, R.C.Liddington, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 90.00 / 2.89
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 60.792, 161.922, 180.156, 90.00, 90.90, 90.00
R / Rfree (%) 21.2 / 26.2

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis (pdb code 2o3o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis, PDB code: 2o3o:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2o3o

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Chlorine binding site 1 out of 6 in the Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:4.0
occ:1.00
NH2 A:ARG66 3.0 32.0 1.0
NH2 C:ARG66 3.0 48.7 1.0
OE1 C:GLN232 3.7 51.1 1.0
NH1 C:ARG66 3.7 51.9 1.0
OG A:SER273 3.7 43.2 1.0
CZ C:ARG66 3.8 46.5 1.0
OE1 A:GLN232 3.9 56.1 1.0
OD1 A:ASN269 4.1 45.6 1.0
CZ A:ARG66 4.3 31.6 1.0
CD C:GLN232 4.6 35.1 1.0
OD1 C:ASN269 4.8 41.4 1.0
NE2 C:GLN232 4.8 38.8 1.0
CB A:SER273 4.9 39.6 1.0
OG C:SER273 4.9 56.3 1.0
CB C:SER273 5.0 52.5 1.0

Chlorine binding site 2 out of 6 in 2o3o

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Chlorine binding site 2 out of 6 in the Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl2

b:25.7
occ:1.00
NH2 D:ARG66 3.3 52.4 1.0
OE1 D:GLN232 3.4 55.9 1.0
NH2 B:ARG66 3.4 36.9 1.0
OE1 B:GLN232 4.2 48.5 1.0
OD1 B:ASN269 4.2 44.1 1.0
CD D:GLN232 4.4 37.4 1.0
CZ D:ARG66 4.6 48.0 1.0
CZ B:ARG66 4.6 33.1 1.0
CD1 D:LEU271 4.8 35.3 1.0

Chlorine binding site 3 out of 6 in 2o3o

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Chlorine binding site 3 out of 6 in the Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl5

b:20.4
occ:1.00
OE1 G:GLN232 3.1 50.1 1.0
NH2 E:ARG66 3.2 34.2 1.0
OG E:SER273 3.6 42.9 1.0
OE1 E:GLN232 4.2 56.6 1.0
CD G:GLN232 4.3 35.2 1.0
CZ E:ARG66 4.5 31.1 1.0
OD1 E:ASN269 4.8 45.9 1.0
CB E:SER273 4.9 40.1 1.0
OD1 G:ASN269 5.0 41.6 1.0

Chlorine binding site 4 out of 6 in 2o3o

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Chlorine binding site 4 out of 6 in the Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl6

b:25.0
occ:1.00
NH2 F:ARG66 3.3 36.4 1.0
OE1 H:GLN232 3.3 53.9 1.0
NH1 H:ARG66 4.3 43.5 1.0
OE1 F:GLN232 4.3 47.6 1.0
CD H:GLN232 4.5 36.4 1.0
CZ F:ARG66 4.5 32.4 1.0
NH2 H:ARG66 4.5 53.2 1.0
OD1 F:ASN269 4.8 44.6 1.0
CZ H:ARG66 4.9 47.7 1.0

Chlorine binding site 5 out of 6 in 2o3o

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Chlorine binding site 5 out of 6 in the Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cl9

b:50.6
occ:1.00
OE1 K:GLN232 3.2 49.3 1.0
NH2 I:ARG66 3.4 33.5 1.0
NH2 K:ARG66 3.5 49.6 1.0
OE1 I:GLN232 3.9 59.1 1.0
CD K:GLN232 4.4 35.6 1.0
CZ K:ARG66 4.5 48.4 1.0
CZ I:ARG66 4.6 29.7 1.0
NE K:ARG66 4.9 38.3 1.0

Chlorine binding site 6 out of 6 in 2o3o

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Chlorine binding site 6 out of 6 in the Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of the Sensor Histidine Kinase Regulator Yyci From Bacillus Subtitlis within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Cl10

b:2.0
occ:1.00
NH2 L:ARG66 3.0 51.0 1.0
OE1 L:GLN232 3.5 56.1 1.0
NH1 J:ARG66 3.5 35.7 1.0
NH2 J:ARG66 3.6 37.0 1.0
OG J:SER273 3.6 44.3 1.0
OE1 J:GLN232 3.9 47.9 1.0
CZ J:ARG66 4.0 33.6 1.0
CZ L:ARG66 4.2 46.9 1.0
OD1 J:ASN269 4.3 43.4 1.0
CD L:GLN232 4.6 37.1 1.0
NH1 L:ARG66 4.7 43.6 1.0
CB J:SER273 4.8 39.6 1.0
CD1 J:LEU271 4.8 34.2 1.0
OG L:SER273 4.9 54.1 1.0
OD1 L:ASN269 4.9 39.6 1.0

Reference:

E.Santelli, R.C.Liddington, M.A.Mohan, J.A.Hoch, H.Szurmant. The Crystal Structure of Bacillus Subtilis Yyci Reveals A Common Fold For Two Members of An Unusual Class of Sensor Histidine Kinase Regulatory Proteins. J.Bacteriol. V. 189 3290 2007.
ISSN: ISSN 0021-9193
PubMed: 17307848
DOI: 10.1128/JB.01937-06
Page generated: Sat Dec 12 09:12:33 2020

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