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Chlorine in PDB 2o5r: Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution

Enzymatic activity of Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution

All present enzymatic activity of Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution:
6.1.1.17;

Protein crystallography data

The structure of Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution, PDB code: 2o5r was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 47.35 / 2.34
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 69.953, 69.953, 283.945, 90.00, 90.00, 120.00
R / Rfree (%) 23.4 / 26.8

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution (pdb code 2o5r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution, PDB code: 2o5r:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2o5r

Go back to Chlorine Binding Sites List in 2o5r
Chlorine binding site 1 out of 3 in the Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl470

b:58.1
occ:1.00
 OH A:TYR194 3.0 28.1 1.0
CD A:ARG212 3.5 28.4 1.0
NH1 A:ARG5 3.7 29.8 1.0
NH2 A:ARG5 3.7 31.4 1.0
NH1 A:ARG212 3.7 30.0 1.0
CZ A:TYR194 3.9 27.4 1.0
CE1 A:TYR194 3.9 28.0 1.0
CZ A:ARG5 4.2 30.6 1.0
CB A:ARG212 4.4 26.6 1.0
CB A:ALA7 4.4 28.1 1.0
NE2 A:HIS216 4.5 34.5 1.0
NE A:ARG212 4.5 28.9 1.0
CD2 A:HIS216 4.5 33.4 1.0
CZ A:ARG212 4.6 29.4 1.0
CG A:ARG212 4.6 27.5 1.0
CE1 A:HIS216 4.6 34.3 1.0
CG A:HIS216 4.7 33.0 1.0
ND1 A:HIS216 4.7 34.1 1.0
SG A:CYS198 4.7 30.1 1.0
O A:ALA7 4.8 29.1 1.0

Chlorine binding site 2 out of 3 in 2o5r

Go back to Chlorine Binding Sites List in 2o5r
Chlorine binding site 2 out of 3 in the Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl471

b:84.3
occ:1.00
 CB A:ALA153 3.7 28.0 1.0
N A:SER188 3.7 29.7 1.0
OG A:SER188 3.8 29.7 1.0
CG A:PRO109 4.0 36.2 1.0
CB A:SER188 4.2 29.5 1.0
CA A:ARG187 4.3 30.3 1.0
CB A:ARG187 4.4 30.6 1.0
C A:ARG187 4.5 29.9 1.0
CA A:SER188 4.6 29.5 1.0
CD A:PRO109 4.6 36.0 1.0
CG A:ARG187 4.6 32.4 1.0
CB A:PRO109 4.7 36.5 1.0
O A:ALA107 4.7 32.0 1.0
N A:PRO109 4.8 36.0 1.0
CG1 A:VAL184 4.8 27.8 1.0
CA A:PRO109 4.9 36.6 1.0
CD1 A:ILE112 5.0 40.8 1.0

Chlorine binding site 3 out of 3 in 2o5r

Go back to Chlorine Binding Sites List in 2o5r
Chlorine binding site 3 out of 3 in the Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Glutamyl-Trna Synthetase 1 (Ec 6.1.1.17) (Glutamate-Trna Ligase 1) (Glurs 1) (TM1351) From Thermotoga Maritima at 2.5 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl472

b:79.7
occ:1.00
 NE A:ARG435 3.5 16.4 1.0
NH2 A:ARG435 3.8 16.8 1.0
O A:TYR431 4.0 19.8 1.0
CZ A:ARG435 4.1 16.4 1.0
C A:TYR431 4.3 19.7 1.0
CD A:ARG435 4.5 16.9 1.0
CB A:TYR431 4.6 19.5 1.0
CE A:MSE432 4.6 25.7 1.0
N A:MSE432 4.7 20.1 1.0
CA A:MSE432 4.8 20.4 1.0
CB A:ARG435 4.8 17.1 1.0
SE A:MSE432 4.9 30.2 0.8
CD2 A:LEU447 4.9 23.3 1.0
CG A:MSE432 5.0 23.2 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 20 09:23:34 2024

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