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Chlorine in PDB 2o6e: Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals

Protein crystallography data

The structure of Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals, PDB code: 2o6e was solved by M.Machius, C.A.Brautigam, R.K.Deka, D.R.Tomchick, S.B.Lumpkins, M.V.Norgard, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.60 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 34.451, 65.921, 151.744, 90.00, 90.00, 90.00
R / Rfree (%) 19 / 23.3

Other elements in 2o6e:

The structure of Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals also contains other interesting chemical elements:

Zinc (Zn) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals (pdb code 2o6e). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals, PDB code: 2o6e:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2o6e

Go back to Chlorine Binding Sites List in 2o6e
Chlorine binding site 1 out of 2 in the Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl311

b:55.1
occ:1.00
OG A:SER148 3.5 33.6 1.0
N A:HIS149 3.8 29.2 1.0
NH1 A:ARG96 4.0 32.6 1.0
NH2 A:ARG96 4.0 26.0 1.0
CA A:SER148 4.2 27.9 1.0
CB A:HIS149 4.3 32.1 1.0
CZ A:ARG96 4.4 29.2 1.0
CB A:SER148 4.4 29.1 1.0
C A:SER148 4.6 28.4 1.0
CA A:HIS149 4.7 31.1 1.0

Chlorine binding site 2 out of 2 in 2o6e

Go back to Chlorine Binding Sites List in 2o6e
Chlorine binding site 2 out of 2 in the Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Native RTP34 From Treponema Pallidum From Zinc-Soaked Crystals within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl312

b:70.8
occ:1.00
O B:HOH562 2.5 40.1 1.0
OE1 B:GLN102 3.2 23.7 1.0
CB B:GLN102 3.8 20.6 1.0
CD B:GLN102 4.3 23.3 1.0
CG2 B:VAL109 4.3 23.4 1.0
CB B:PHE100 4.4 21.8 1.0
CG1 B:VAL109 4.6 24.2 1.0
CG B:GLN102 4.7 20.2 1.0
N B:GLN102 4.7 17.3 1.0
CD B:ARG141 4.7 22.4 1.0
O B:PHE100 4.8 20.0 1.0
CB B:LYS139 4.8 21.0 1.0
CB B:ARG141 4.9 20.9 1.0
CA B:GLN102 4.9 19.2 1.0
C B:PHE100 4.9 20.5 1.0
O B:LYS139 5.0 20.9 1.0

Reference:

R.K.Deka, C.A.Brautigam, F.L.Tomson, S.B.Lumpkins, D.R.Tomchick, M.Machius, M.V.Norgard. Crystal Structure of the TP34 (TP0971) Lipoprotein of Treponema Pallidum: Implications of Its Metal-Bound State and Affinity For Human Lactoferrin. J.Biol.Chem. V. 282 5944 2007.
ISSN: ISSN 0021-9258
PubMed: 17192261
DOI: 10.1074/JBC.M610215200
Page generated: Sat Dec 12 09:12:46 2020

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