Chlorine in PDB 2oik: Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution
Protein crystallography data
The structure of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution, PDB code: 2oik
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.55 /
1.65
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
45.243,
47.981,
69.766,
108.13,
98.22,
90.34
|
R / Rfree (%)
|
17.9 /
22.3
|
Other elements in 2oik:
The structure of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution
(pdb code 2oik). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution, PDB code: 2oik:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 2oik
Go back to
Chlorine Binding Sites List in 2oik
Chlorine binding site 1 out
of 5 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl202
b:17.4
occ:1.00
|
O
|
A:HOH212
|
2.9
|
10.5
|
1.0
|
O
|
A:HOH241
|
3.0
|
20.9
|
1.0
|
NE2
|
A:HIS99
|
3.0
|
8.7
|
1.0
|
O
|
A:HOH209
|
3.3
|
9.0
|
1.0
|
N
|
A:GLY90
|
3.3
|
9.2
|
1.0
|
O
|
A:HOH269
|
3.5
|
22.7
|
1.0
|
NE2
|
A:HIS97
|
3.6
|
13.9
|
1.0
|
CB
|
A:LEU89
|
3.6
|
6.8
|
1.0
|
CE1
|
A:HIS99
|
3.8
|
11.4
|
1.0
|
CE1
|
A:HIS97
|
3.8
|
15.9
|
1.0
|
O3
|
A:GOL203
|
3.9
|
12.6
|
1.0
|
CA
|
A:GLY90
|
4.1
|
10.1
|
1.0
|
CD2
|
A:HIS99
|
4.1
|
10.8
|
1.0
|
C
|
A:LEU89
|
4.2
|
9.0
|
1.0
|
CA
|
A:LEU89
|
4.3
|
10.4
|
1.0
|
CG
|
A:LEU89
|
4.3
|
8.5
|
1.0
|
CD1
|
A:LEU89
|
4.3
|
15.6
|
1.0
|
N
|
A:LEU89
|
4.4
|
6.1
|
1.0
|
O
|
A:HOH318
|
4.6
|
34.5
|
1.0
|
CD2
|
A:HIS97
|
4.6
|
11.6
|
1.0
|
N
|
A:ASN91
|
4.8
|
9.5
|
1.0
|
O
|
A:HOH235
|
4.8
|
18.3
|
1.0
|
ND1
|
A:HIS97
|
4.9
|
10.7
|
1.0
|
O1
|
A:GOL203
|
4.9
|
34.6
|
1.0
|
C1
|
A:GOL203
|
4.9
|
31.6
|
1.0
|
C
|
A:GLY90
|
5.0
|
7.9
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 2oik
Go back to
Chlorine Binding Sites List in 2oik
Chlorine binding site 2 out
of 5 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl202
b:18.5
occ:1.00
|
O
|
B:HOH213
|
2.9
|
12.3
|
1.0
|
O
|
B:HOH233
|
2.9
|
18.5
|
1.0
|
NE2
|
B:HIS99
|
3.2
|
8.5
|
1.0
|
N
|
B:GLY90
|
3.3
|
11.4
|
1.0
|
O
|
B:HOH206
|
3.5
|
9.1
|
1.0
|
CB
|
B:LEU89
|
3.5
|
5.8
|
1.0
|
O
|
B:HOH223
|
3.6
|
18.8
|
1.0
|
O1
|
B:GOL203
|
3.6
|
12.9
|
1.0
|
NE2
|
B:HIS97
|
3.7
|
13.4
|
1.0
|
CE1
|
B:HIS99
|
3.9
|
8.3
|
1.0
|
CE1
|
B:HIS97
|
4.0
|
11.2
|
1.0
|
CA
|
B:GLY90
|
4.0
|
11.1
|
1.0
|
C
|
B:LEU89
|
4.2
|
7.9
|
1.0
|
CD1
|
B:LEU89
|
4.2
|
12.3
|
1.0
|
CA
|
B:LEU89
|
4.2
|
6.8
|
1.0
|
CG
|
B:LEU89
|
4.2
|
12.0
|
1.0
|
CD2
|
B:HIS99
|
4.3
|
5.4
|
1.0
|
N
|
B:LEU89
|
4.3
|
7.9
|
1.0
|
O3
|
B:GOL203
|
4.6
|
29.7
|
1.0
|
N
|
B:ASN91
|
4.6
|
10.7
|
1.0
|
O
|
B:HOH228
|
4.6
|
18.5
|
1.0
|
CD2
|
B:HIS97
|
4.7
|
11.4
|
1.0
|
C
|
B:GLY90
|
4.8
|
8.2
|
1.0
|
C3
|
B:GOL203
|
5.0
|
29.6
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 2oik
Go back to
Chlorine Binding Sites List in 2oik
Chlorine binding site 3 out
of 5 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl202
b:18.9
occ:1.00
|
O
|
C:HOH220
|
2.8
|
15.8
|
1.0
|
NE2
|
C:HIS99
|
3.1
|
9.9
|
1.0
|
O
|
C:HOH226
|
3.1
|
15.5
|
1.0
|
N
|
C:GLY90
|
3.3
|
12.8
|
1.0
|
O
|
C:HOH209
|
3.3
|
11.1
|
1.0
|
O
|
C:HOH231
|
3.6
|
19.1
|
1.0
|
NE2
|
C:HIS97
|
3.6
|
12.4
|
1.0
|
CB
|
C:LEU89
|
3.6
|
10.3
|
1.0
|
O1
|
C:GOL203
|
3.7
|
22.3
|
1.0
|
CE1
|
C:HIS99
|
3.9
|
8.8
|
1.0
|
CE1
|
C:HIS97
|
3.9
|
13.1
|
1.0
|
CA
|
C:GLY90
|
4.1
|
11.7
|
1.0
|
CD2
|
C:HIS99
|
4.2
|
11.1
|
1.0
|
C
|
C:LEU89
|
4.2
|
8.6
|
1.0
|
CA
|
C:LEU89
|
4.3
|
8.9
|
1.0
|
CD1
|
C:LEU89
|
4.3
|
12.3
|
1.0
|
N
|
C:LEU89
|
4.3
|
7.8
|
1.0
|
CG
|
C:LEU89
|
4.3
|
10.5
|
1.0
|
O2
|
C:GOL203
|
4.5
|
34.0
|
1.0
|
CD2
|
C:HIS97
|
4.7
|
12.4
|
1.0
|
N
|
C:ASN91
|
4.7
|
10.2
|
1.0
|
O
|
C:HOH218
|
4.8
|
15.7
|
1.0
|
C
|
C:GLY90
|
4.9
|
10.7
|
1.0
|
C1
|
C:GOL203
|
4.9
|
26.4
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 2oik
Go back to
Chlorine Binding Sites List in 2oik
Chlorine binding site 4 out
of 5 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl202
b:17.1
occ:1.00
|
O
|
D:HOH210
|
2.9
|
9.4
|
1.0
|
O
|
D:HOH228
|
3.0
|
18.1
|
1.0
|
NE2
|
D:HIS99
|
3.1
|
12.3
|
1.0
|
O
|
D:HOH206
|
3.2
|
6.9
|
1.0
|
N
|
D:GLY90
|
3.3
|
7.8
|
1.0
|
NE2
|
D:HIS97
|
3.5
|
10.2
|
1.0
|
O1
|
D:GOL204
|
3.5
|
15.3
|
1.0
|
O
|
D:HOH253
|
3.6
|
26.9
|
1.0
|
CB
|
D:LEU89
|
3.6
|
7.8
|
1.0
|
CE1
|
D:HIS99
|
3.8
|
9.2
|
1.0
|
CE1
|
D:HIS97
|
3.9
|
9.5
|
1.0
|
CA
|
D:GLY90
|
4.0
|
10.3
|
1.0
|
CD2
|
D:HIS99
|
4.2
|
9.6
|
1.0
|
C
|
D:LEU89
|
4.2
|
7.9
|
1.0
|
CG
|
D:LEU89
|
4.3
|
8.6
|
1.0
|
CA
|
D:LEU89
|
4.3
|
8.0
|
1.0
|
CD1
|
D:LEU89
|
4.3
|
13.4
|
1.0
|
N
|
D:LEU89
|
4.4
|
6.5
|
1.0
|
O
|
D:HOH300
|
4.5
|
41.6
|
1.0
|
CD2
|
D:HIS97
|
4.6
|
8.6
|
1.0
|
O2
|
D:GOL204
|
4.7
|
26.9
|
1.0
|
N
|
D:ASN91
|
4.7
|
9.7
|
1.0
|
C
|
D:GLY90
|
4.9
|
11.0
|
1.0
|
O
|
D:HOH230
|
5.0
|
19.2
|
1.0
|
C1
|
D:GOL204
|
5.0
|
21.0
|
1.0
|
ND1
|
D:HIS97
|
5.0
|
10.6
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 2oik
Go back to
Chlorine Binding Sites List in 2oik
Chlorine binding site 5 out
of 5 in the Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A Histidine Triad (Hit) Protein (MFLA_2506) From Methylobacillus Flagellatus Kt at 1.65 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl203
b:21.6
occ:1.00
|
O
|
C:HOH237
|
2.5
|
24.8
|
1.0
|
N
|
D:SER113
|
3.1
|
10.0
|
1.0
|
O
|
C:HOH249
|
3.1
|
26.6
|
1.0
|
OG
|
D:SER113
|
3.2
|
12.1
|
1.0
|
CB
|
C:TRP115
|
3.5
|
13.0
|
1.0
|
O
|
D:HOH318
|
3.6
|
30.4
|
1.0
|
CB
|
D:ASN112
|
3.6
|
11.2
|
1.0
|
CA
|
D:GLY116
|
3.8
|
10.6
|
1.0
|
CA
|
D:ASN112
|
3.8
|
10.3
|
1.0
|
CB
|
D:SER113
|
3.9
|
11.5
|
1.0
|
C
|
D:ASN112
|
3.9
|
11.4
|
1.0
|
CA
|
D:SER113
|
4.0
|
10.6
|
1.0
|
CG
|
C:TRP115
|
4.0
|
8.9
|
1.0
|
O
|
C:TRP115
|
4.1
|
12.8
|
1.0
|
OD1
|
D:ASN112
|
4.1
|
11.4
|
1.0
|
CG
|
D:ASN112
|
4.1
|
10.2
|
1.0
|
CD1
|
C:TRP115
|
4.2
|
14.3
|
1.0
|
N
|
D:GLY116
|
4.2
|
10.6
|
1.0
|
O
|
D:SER113
|
4.2
|
7.8
|
1.0
|
CA
|
C:TRP115
|
4.4
|
13.4
|
1.0
|
C
|
D:SER113
|
4.6
|
9.3
|
1.0
|
O
|
C:HOH218
|
4.7
|
15.7
|
1.0
|
C
|
C:TRP115
|
4.7
|
11.8
|
1.0
|
C
|
D:GLY116
|
4.9
|
10.9
|
1.0
|
N
|
D:GLU117
|
5.0
|
12.1
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 20 09:33:19 2024
|