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Chlorine in PDB 2oqz: The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2

Enzymatic activity of The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2

All present enzymatic activity of The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2:
3.4.22.51;

Protein crystallography data

The structure of The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2, PDB code: 2oqz was solved by R.Wu, R.Zhang, A.W.Maresso, O.Schneewind, A.Joachimiak, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 42.14 / 1.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 40.490, 64.964, 43.653, 90.00, 105.06, 90.00
R / Rfree (%) 19.1 / 22.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2 (pdb code 2oqz). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2, PDB code: 2oqz:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2oqz

Go back to Chlorine Binding Sites List in 2oqz
Chlorine binding site 1 out of 2 in the The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl233

b:44.8
occ:0.50
CL1D A:CS4233 0.0 44.8 0.5
C1O A:CS4233 1.7 44.3 0.5
C1G A:CS4233 2.6 44.2 0.5
C1P A:CS4233 2.7 44.4 0.5
CD2 A:TYR191 3.1 25.1 0.5
CL1E A:CS4233 3.4 44.6 0.5
CE2 A:TYR191 3.6 26.0 0.5
C1H A:CS4233 3.8 44.4 0.5
CD1 A:TYR191 3.9 24.5 0.5
C1I A:CS4233 4.0 44.4 0.5
NH2 A:ARG125 4.0 18.6 1.0
CE1 A:TYR191 4.0 23.9 0.5
CG A:TYR191 4.1 24.2 0.5
CZ A:ARG125 4.4 18.9 1.0
C1Q A:CS4233 4.4 43.9 0.5
ND2 A:ASN102 4.5 19.2 1.0
CB A:TYR191 4.5 23.4 0.5
NH1 A:ARG125 4.8 19.4 1.0
CZ A:TYR191 4.9 25.1 0.5
NE A:ARG125 4.9 17.0 1.0

Chlorine binding site 2 out of 2 in 2oqz

Go back to Chlorine Binding Sites List in 2oqz
Chlorine binding site 2 out of 2 in the The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of The Crystal Structure of Sortase B From B.Anthracis in Complex with AAEK2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl233

b:44.6
occ:0.50
CL1E A:CS4233 0.0 44.6 0.5
C1P A:CS4233 1.8 44.4 0.5
C1I A:CS4233 2.7 44.4 0.5
C1O A:CS4233 2.8 44.3 0.5
O A:HOH793 3.3 21.7 1.0
CL1D A:CS4233 3.4 44.8 0.5
ND2 A:ASN102 3.4 19.2 1.0
O A:HOH822 3.6 35.0 1.0
CB A:ASN102 3.8 17.9 1.0
C1Q A:CS4233 4.0 43.9 0.5
C1G A:CS4233 4.1 44.2 0.5
CG A:ASN102 4.1 19.6 1.0
O A:HOH792 4.3 35.1 1.0
C1H A:CS4233 4.5 44.4 0.5
CE2 A:TYR124 4.5 17.8 1.0
N A:ASN102 5.0 17.2 1.0
CA A:ASN102 5.0 18.1 1.0
CE2 A:TYR191 5.0 26.0 0.5
O A:HOH764 5.0 21.2 1.0

Reference:

A.W.Maresso, R.Wu, J.W.Kern, R.Zhang, D.Janik, D.M.Missiakas, M.E.Duban, A.Joachimiak, O.Schneewind. Activation of Inhibitors By Sortase Triggers Irreversible Modification of the Active Site. J.Biol.Chem. V. 282 23129 2007.
ISSN: ISSN 0021-9258
PubMed: 17545669
DOI: 10.1074/JBC.M701857200
Page generated: Sat Jul 20 09:42:45 2024

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