Chlorine in PDB 2ox0: Crystal Structure of JMJD2A Complexed with Histone H3 Peptide Dimethylated at LYS9

The structure of Crystal Structure of JMJD2A Complexed with Histone H3 Peptide Dimethylated at LYS9, PDB code: 2ox0 was solved by E.S.Pilka, S.S.Ng, K.L.Kavanagh, M.A.Mcdonough, P.Savitsky, F.Von Delft, C.H.Arrowsmith, J.Weigelt, A.Edwards, M.Sundstrom, C.J.Schofield, U.Oppermann, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	41.49 / 1.95
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	101.210, 150.004, 57.228, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 21

The structure of Crystal Structure of JMJD2A Complexed with Histone H3 Peptide Dimethylated at LYS9 also contains other interesting chemical elements:

Nickel	(Ni)	2 atoms
Zinc	(Zn)	2 atoms

The binding sites of Chlorine atom in the Crystal Structure of JMJD2A Complexed with Histone H3 Peptide Dimethylated at LYS9 (pdb code 2ox0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of JMJD2A Complexed with Histone H3 Peptide Dimethylated at LYS9, PDB code: 2ox0:

Chlorine binding site 1 out of 1 in the Crystal Structure of JMJD2A Complexed with Histone H3 Peptide Dimethylated at LYS9


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of JMJD2A Complexed with Histone H3 Peptide Dimethylated at LYS9 within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl503 b:64.6 occ:1.00 N A:GLY229 3.1 51.0 1.0 C A:PHE227 3.4 49.0 1.0 N A:SER230 3.5 50.9 1.0 CA A:GLY229 3.6 52.4 1.0 CA A:PHE227 3.6 46.9 1.0 N A:PRO228 3.6 50.9 1.0 O A:PHE227 3.8 48.1 1.0 CD A:PRO228 3.8 52.4 1.0 OG A:SER230 4.0 47.2 1.0 CB A:PHE227 4.0 46.2 1.0 C A:GLY229 4.1 50.2 1.0 C A:PRO228 4.2 52.4 1.0 CA A:PRO228 4.5 52.5 1.0 CG A:PRO228 4.5 52.2 1.0 CB A:SER230 4.6 49.5 1.0 CA A:SER230 4.7 48.4 1.0 CD2 A:PHE227 4.8 48.2 1.0 CG A:PHE227 4.9 44.5 1.0 N A:PHE227 4.9 44.4 1.0

S.S.Ng, K.L.Kavanagh, M.A.Mcdonough, D.Butler, E.S.Pilka, B.M.Lienard, J.E.Bray, P.Savitsky, O.Gileadi, F.Von Delft, N.R.Rose, J.Offer, J.C.Scheinost, T.Borowski, M.Sundstrom, C.J.Schofield, U.Oppermann. Crystal Structures of Histone Demethylase JMJD2A Reveal Basis For Substrate Specificity. Nature V. 448 87 2007.
ISSN: ISSN 0028-0836
PubMed: 17589501
DOI: 10.1038/NATURE05971