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Chlorine in PDB 2ox8: Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.

Protein crystallography data

The structure of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain., PDB code: 2ox8 was solved by W.I.Weis, H.Feinberg, K.Drickamer, M.E.Taylor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.92 / 2.50
Space group P 32
Cell size a, b, c (Å), α, β, γ (°) 80.422, 80.422, 67.159, 90.00, 90.00, 120.00
R / Rfree (%) 23.3 / 30.8

Other elements in 2ox8:

The structure of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. also contains other interesting chemical elements:

Calcium (Ca) 6 atoms
Zinc (Zn) 16 atoms

Chlorine Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 12;

Binding sites:

The binding sites of Chlorine atom in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. (pdb code 2ox8). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 12 binding sites of Chlorine where determined in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain., PDB code: 2ox8:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 12 in 2ox8

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Chlorine binding site 1 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl6

b:39.5
occ:1.00
ZN A:ZN1 2.0 19.4 1.0
NE2 A:HIS610 3.4 19.5 1.0
CD2 A:HIS610 3.6 17.9 1.0
CL A:CL7 3.9 18.2 1.0
CE1 A:HIS610 4.7 22.1 1.0
CG A:HIS610 4.9 18.5 1.0

Chlorine binding site 2 out of 12 in 2ox8

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Chlorine binding site 2 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl7

b:18.2
occ:1.00
ZN A:ZN1 2.3 19.4 1.0
NE2 A:HIS610 3.7 19.5 1.0
CL A:CL6 3.9 39.5 1.0
CE1 A:HIS610 4.0 22.1 1.0
CD2 A:HIS610 4.9 17.9 1.0

Chlorine binding site 3 out of 12 in 2ox8

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Chlorine binding site 3 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl8

b:37.7
occ:1.00
ZN A:ZN2 2.1 22.9 1.0
O A:PHE644 3.1 11.4 1.0
ND2 A:ASN646 3.2 27.8 1.0
OE2 A:GLU650 3.3 15.2 1.0
OE2 A:GLU731 3.6 26.5 1.0
OE1 A:GLU650 3.6 14.9 1.0
C A:PHE644 3.8 12.5 1.0
CB A:PHE644 3.9 7.0 1.0
CD A:GLU650 3.9 14.8 1.0
CE A:LYS617 3.9 15.8 1.0
CG A:ASN646 4.1 25.2 1.0
OE1 A:GLU731 4.1 28.4 1.0
N A:ASN646 4.1 18.2 1.0
CB A:ASN646 4.2 24.3 1.0
CD A:GLU731 4.2 26.3 1.0
CA A:PHE644 4.5 9.9 1.0
CD A:LYS617 4.5 20.2 1.0
N A:ILE645 4.6 14.7 1.0
CA A:ILE645 4.8 17.6 1.0
CA A:ASN646 4.8 22.4 1.0
NZ A:LYS617 4.8 21.4 1.0
C A:ILE645 4.9 18.8 1.0
O A:HOH749 4.9 22.9 1.0
N A:PHE644 4.9 8.5 1.0
CG A:PHE644 5.0 6.1 1.0

Chlorine binding site 4 out of 12 in 2ox8

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Chlorine binding site 4 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl6

b:22.4
occ:1.00
ZN B:ZN1 2.3 15.8 1.0
NE2 B:HIS610 3.1 17.1 1.0
CD2 B:HIS610 3.5 18.3 1.0
CL B:CL7 3.9 14.8 1.0
CE1 B:HIS610 4.3 18.0 1.0
CG B:HIS610 4.8 17.2 1.0

Chlorine binding site 5 out of 12 in 2ox8

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Chlorine binding site 5 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl7

b:14.8
occ:1.00
ZN B:ZN1 2.3 15.8 1.0
NE2 B:HIS610 3.5 17.1 1.0
CE1 B:HIS610 3.7 18.0 1.0
CL B:CL6 3.9 22.4 1.0
CD2 B:HIS610 4.9 18.3 1.0
ND1 B:HIS610 5.0 16.4 1.0

Chlorine binding site 6 out of 12 in 2ox8

Go back to Chlorine Binding Sites List in 2ox8
Chlorine binding site 6 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl8

b:34.0
occ:1.00
ZN B:ZN2 2.0 25.1 1.0
O B:PHE644 3.0 14.5 1.0
OE1 B:GLU650 3.3 23.2 1.0
OE1 B:GLU731 3.3 16.1 1.0
OE2 B:GLU650 3.6 24.8 1.0
C B:PHE644 3.7 17.4 1.0
ND2 B:ASN646 3.7 25.5 1.0
CE B:LYS617 3.7 13.2 1.0
CB B:PHE644 3.8 10.4 1.0
CD B:GLU650 3.8 24.0 1.0
OE2 B:GLU731 3.9 21.2 1.0
CD B:GLU731 4.0 21.4 1.0
N B:ASN646 4.2 20.4 1.0
CG B:ASN646 4.2 23.6 1.0
CA B:PHE644 4.3 13.1 1.0
NZ B:LYS617 4.3 13.9 1.0
CB B:ASN646 4.4 25.2 1.0
CD B:LYS617 4.5 14.6 1.0
N B:ILE645 4.5 17.9 1.0
CA B:ILE645 4.7 18.6 1.0
N B:PHE644 4.7 14.2 1.0
CG B:PHE644 4.9 10.2 1.0
C B:ILE645 4.9 20.1 1.0
OD1 B:ASN646 5.0 22.8 1.0
CA B:ASN646 5.0 24.1 1.0

Chlorine binding site 7 out of 12 in 2ox8

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Chlorine binding site 7 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl3

b:43.8
occ:0.50
ZN C:ZN1 2.9 39.0 0.5
NE2 C:HIS610 4.3 29.2 0.5
CD2 C:HIS610 4.5 28.4 0.5
CL C:CL4 4.8 47.2 0.5

Chlorine binding site 8 out of 12 in 2ox8

Go back to Chlorine Binding Sites List in 2ox8
Chlorine binding site 8 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl4

b:47.2
occ:0.50
ZN C:ZN1 2.0 39.0 0.5
CE1 C:HIS610 3.2 29.0 0.5
NE2 C:HIS610 3.2 29.2 0.5
ND1 C:HIS610 4.4 28.9 0.5
CD2 C:HIS610 4.5 28.4 0.5
CL C:CL3 4.8 43.8 0.5

Chlorine binding site 9 out of 12 in 2ox8

Go back to Chlorine Binding Sites List in 2ox8
Chlorine binding site 9 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl5

b:25.5
occ:0.50
ZN C:ZN2 2.0 36.6 0.5
O C:PHE644 2.7 29.5 0.5
OE1 C:GLU731 3.5 29.3 0.5
OE1 C:GLU650 3.5 23.6 0.5
OE2 C:GLU650 3.5 26.6 0.5
CE C:LYS617 3.6 30.6 0.5
C C:PHE644 3.6 29.3 0.5
OE2 C:GLU731 3.7 28.7 0.5
CB C:PHE644 3.9 28.1 0.5
CD C:GLU650 3.9 27.5 0.5
CD C:GLU731 4.0 28.0 0.5
ND2 C:ASN646 4.1 37.1 0.5
CD C:LYS617 4.2 31.2 0.5
N C:ASN646 4.3 34.3 0.5
CA C:PHE644 4.3 28.5 0.5
N C:ILE645 4.5 30.1 0.5
NZ C:LYS617 4.6 31.6 0.5
N C:PHE644 4.7 27.6 0.5
CA C:ILE645 4.7 31.4 0.5
CB C:ASN646 4.7 36.2 0.5
CG C:ASN646 4.9 36.9 0.5
C C:ILE645 5.0 32.6 0.5

Chlorine binding site 10 out of 12 in 2ox8

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Chlorine binding site 10 out of 12 in the Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Human Scavenger Receptor C-Type Lectin Carbohydrate- Recognition Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl3

b:62.2
occ:0.50
ZN D:ZN1 2.9 31.8 0.5
CD2 D:HIS610 4.2 25.5 0.5
NE2 D:HIS610 4.4 25.8 0.5
CL D:CL4 4.4 44.2 0.5

Reference:

H.Feinberg, M.E.Taylor, W.I.Weis. Scavenger Receptor C-Type Lectin Binds to the Leukocyte Cell Surface Glycan Lewis(X) By A Novel Mechanism. J.Biol.Chem. V. 282 17250 2007.
ISSN: ISSN 0021-9258
PubMed: 17420244
DOI: 10.1074/JBC.M701624200
Page generated: Sat Dec 12 09:14:25 2020

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