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Chlorine in PDB 2p10: Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution, PDB code: 2p10 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.08 / 2.15
Space group H 3
Cell size a, b, c (Å), α, β, γ (°) 180.269, 180.269, 185.514, 90.00, 90.00, 120.00
R / Rfree (%) 16.2 / 20.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution (pdb code 2p10). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution, PDB code: 2p10:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2p10

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Chlorine binding site 1 out of 6 in the Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl289

b:46.1
occ:1.00
OG A:SER260 2.9 55.7 1.0
O A:HOH301 3.0 43.6 1.0
N A:SER260 3.3 55.1 1.0
N A:ALA258 3.3 54.3 1.0
CB A:SER260 3.5 57.1 1.0
CE1 A:HIS232 3.5 55.8 1.0
O A:HOH337 3.7 47.6 1.0
CA A:GLY257 3.7 52.0 1.0
N A:SER259 3.7 56.1 1.0
OG1 A:THR193 3.8 82.5 1.0
C A:GLY257 4.0 53.4 1.0
ND1 A:HIS232 4.0 48.9 1.0
CA A:SER260 4.0 56.1 1.0
CB A:SER259 4.1 58.5 1.0
CA A:SER259 4.2 58.1 1.0
C A:SER259 4.2 56.7 1.0
C A:ALA258 4.3 55.4 1.0
CA A:ALA258 4.3 54.8 1.0
CZ A:PHE255 4.3 52.7 1.0
CG2 A:THR193 4.5 82.2 1.0
O A:HOH422 4.6 67.8 1.0
O A:TYR256 4.6 49.0 1.0
NE2 A:HIS232 4.6 53.2 1.0
CB A:THR193 4.7 83.1 1.0
CB A:ALA258 4.8 52.7 1.0
O A:ILE236 4.8 56.5 1.0
N A:GLY257 4.9 50.5 1.0
CE2 A:PHE255 5.0 50.3 1.0
OG A:SER259 5.0 64.0 1.0

Chlorine binding site 2 out of 6 in 2p10

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Chlorine binding site 2 out of 6 in the Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl290

b:76.8
occ:1.00
OH A:TYR54 3.0 55.0 1.0
NH1 A:ARG60 3.1 55.7 0.5
NH2 A:ARG60 3.3 51.3 0.5
CZ A:ARG60 3.6 49.4 0.5
O A:HOH416 3.6 60.7 1.0
CE1 A:TYR54 3.7 52.4 1.0
CZ A:TYR54 3.8 56.0 1.0
O A:HOH337 3.8 47.6 1.0
NH2 A:ARG60 4.0 52.4 0.5
CB A:ALA258 4.1 52.7 1.0
OH A:TYR168 4.1 67.2 1.0
CE2 A:PHE127 4.3 49.7 1.0
CZ A:PHE127 4.4 53.5 1.0
O A:HOH367 4.4 51.9 1.0
NE2 A:HIS232 4.6 53.2 1.0
NE A:ARG60 4.6 55.3 0.5
CZ A:ARG60 4.8 57.1 0.5
CB A:SER56 4.8 49.9 1.0
CD2 A:PHE127 4.8 50.9 1.0
NE A:ARG60 4.8 57.4 0.5
CD1 A:TYR54 5.0 55.2 1.0
CE2 A:TYR256 5.0 53.0 1.0

Chlorine binding site 3 out of 6 in 2p10

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Chlorine binding site 3 out of 6 in the Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl288

b:52.9
occ:1.00
OG B:SER260 3.0 59.1 1.0
O B:HOH327 3.1 57.9 1.0
N B:SER260 3.2 57.3 1.0
N B:ALA258 3.4 54.9 1.0
O B:HOH328 3.5 58.9 1.0
CB B:SER260 3.5 57.8 1.0
CE1 B:HIS232 3.6 52.7 1.0
OG1 B:THR193 3.6 85.9 1.0
N B:SER259 3.7 55.2 1.0
CA B:GLY257 3.8 51.5 1.0
CB B:SER259 4.0 57.1 1.0
ND1 B:HIS232 4.0 52.6 1.0
CA B:SER260 4.0 57.1 1.0
C B:GLY257 4.1 52.5 1.0
CA B:SER259 4.1 56.8 1.0
C B:SER259 4.1 56.6 1.0
CG2 B:THR193 4.2 83.6 1.0
C B:ALA258 4.2 55.0 1.0
CA B:ALA258 4.3 55.0 1.0
CB B:THR193 4.4 84.6 1.0
CZ B:PHE255 4.5 52.9 1.0
NE2 B:HIS232 4.7 52.5 1.0
O B:TYR256 4.7 47.9 1.0
CB B:ALA258 4.8 54.4 1.0
O B:ILE236 4.9 55.4 1.0
N B:MSE261 5.0 55.5 1.0

Chlorine binding site 4 out of 6 in 2p10

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Chlorine binding site 4 out of 6 in the Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl290

b:44.6
occ:1.00
OG C:SER260 3.0 59.5 1.0
O C:HOH303 3.1 43.6 1.0
N C:ALA258 3.2 54.8 1.0
N C:SER260 3.3 56.6 1.0
CB C:SER260 3.5 60.5 1.0
O C:HOH337 3.5 48.7 1.0
CE1 C:HIS232 3.6 55.6 1.0
OG1 C:THR193 3.6 75.1 1.0
N C:SER259 3.7 54.9 1.0
CA C:GLY257 3.7 52.7 1.0
C C:GLY257 4.0 51.6 1.0
CA C:SER260 4.0 57.0 1.0
ND1 C:HIS232 4.0 47.7 1.0
CB C:SER259 4.0 53.9 1.0
CG2 C:THR193 4.1 78.1 1.0
CA C:SER259 4.2 55.2 1.0
C C:ALA258 4.2 54.5 1.0
C C:SER259 4.2 55.6 1.0
CA C:ALA258 4.2 55.2 1.0
CB C:THR193 4.4 81.7 1.0
O C:HOH440 4.5 69.6 1.0
CZ C:PHE255 4.5 49.8 1.0
NE2 C:HIS232 4.6 48.6 1.0
O C:TYR256 4.7 48.3 1.0
CB C:ALA258 4.7 55.6 1.0
OG C:SER259 4.9 56.8 1.0
O C:ILE236 4.9 55.0 1.0
O C:HOH432 4.9 62.3 1.0
N C:GLY257 5.0 51.5 1.0

Chlorine binding site 5 out of 6 in 2p10

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Chlorine binding site 5 out of 6 in the Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl291

b:72.6
occ:1.00
N C:SER66 3.2 54.1 1.0
O F:HOH288 3.3 48.7 1.0
NH2 C:ARG263 3.5 78.2 1.0
CA C:GLY65 3.5 54.0 1.0
NH1 C:ARG263 3.6 81.0 1.0
OG C:SER66 3.6 63.2 1.0
O C:HOH465 3.8 60.4 1.0
C C:GLY65 3.9 54.3 1.0
CZ C:ARG263 4.0 81.4 1.0
CB C:SER66 4.0 55.1 1.0
CG2 F:THR144 4.2 45.3 1.0
CA C:SER66 4.2 55.0 1.0
CD1 C:LEU192 4.4 72.9 1.0
CB F:THR144 4.4 52.1 1.0
CD2 C:LEU192 4.7 74.7 1.0
CG C:LEU192 4.8 74.1 1.0
N C:GLY65 4.9 53.7 1.0

Chlorine binding site 6 out of 6 in 2p10

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Chlorine binding site 6 out of 6 in the Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A Putative Phosphonopyruvate Hydrolase (MLL9387) From Mesorhizobium Loti MAFF303099 at 2.15 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl288

b:51.4
occ:1.00
OG D:SER260 3.1 56.4 1.0
O D:HOH298 3.2 46.7 1.0
N D:ALA258 3.3 53.3 1.0
N D:SER260 3.3 57.2 1.0
CB D:SER260 3.6 57.3 1.0
N D:SER259 3.6 55.6 1.0
CE1 D:HIS232 3.7 58.0 1.0
O D:HOH321 3.7 53.3 1.0
CA D:GLY257 3.7 52.0 1.0
OG1 D:THR193 3.8 78.4 1.0
C D:GLY257 4.0 52.0 1.0
CA D:SER260 4.0 56.7 1.0
ND1 D:HIS232 4.1 50.4 1.0
CB D:SER259 4.1 56.7 1.0
CA D:SER259 4.1 57.7 1.0
C D:SER259 4.2 57.0 1.0
C D:ALA258 4.2 55.6 1.0
CG2 D:THR193 4.2 82.5 1.0
CA D:ALA258 4.3 54.5 1.0
CZ D:PHE255 4.4 55.6 1.0
CB D:THR193 4.6 82.0 1.0
OG D:SER259 4.7 68.8 1.0
CB D:ALA258 4.7 53.4 1.0
O D:TYR256 4.8 48.4 1.0
NE2 D:HIS232 4.8 58.0 1.0
O D:ILE236 4.9 56.5 1.0
N D:GLY257 5.0 50.7 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Thu Jul 10 23:43:55 2025

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