Chlorine in PDB 2p1r: Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases.

The structure of Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases., PDB code: 2p1r was solved by C.E.Nichols, H.K.Lamb, M.Lockyer, I.G.Charles, S.Pyne, A.R.Hawkins, D.K.Stammers, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	30.00 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	107.000, 70.990, 102.160, 90.00, 118.51, 90.00
R / Rfree (%)	20.6 / 25.5

The structure of Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases. also contains other interesting chemical elements:

Calcium	(Ca)	10 atoms
Sodium	(Na)	2 atoms

The binding sites of Chlorine atom in the Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases. (pdb code 2p1r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases., PDB code: 2p1r:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases. within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl303 b:49.7 occ:1.00 O C:HOH351 3.1 33.8 1.0 N C:GLY66 3.1 32.9 1.0 O C:HOH386 3.1 58.4 1.0 OD1 C:ASN12 3.2 57.8 1.0 OG1 C:THR69 3.2 18.6 1.0 CA C:GLY66 3.5 40.0 1.0 O C:HOH377 3.6 48.9 1.0 N C:THR69 3.9 42.7 1.0 C C:GLY66 3.9 45.5 1.0 CB C:THR69 4.0 24.5 1.0 CG C:ASN12 4.1 45.9 1.0 O C:GLY66 4.2 39.4 1.0 C C:GLY65 4.2 31.7 1.0 N C:GLY68 4.4 41.3 1.0 CA C:THR69 4.5 31.2 1.0 CA C:GLY68 4.6 38.5 1.0 CA C:GLY65 4.6 30.7 1.0 O C:HOH316 4.6 53.0 1.0 C C:GLY68 4.6 43.4 1.0 CB C:ASN12 4.7 40.4 1.0 N C:ASP67 4.7 45.0 1.0 NZ C:LYS14 5.0 86.0 1.0 CA C:GLY94 5.0 56.9 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases.


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases. within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl303 b:48.3 occ:1.00 O D:HOH322 2.7 36.6 1.0 N D:GLY66 3.1 22.4 1.0 O D:HOH399 3.1 50.6 1.0 OG1 D:THR69 3.2 22.9 1.0 O D:HOH327 3.4 48.5 1.0 CA D:GLY66 3.4 28.1 1.0 C D:GLY66 3.9 36.9 1.0 N D:THR69 3.9 29.8 1.0 OD1 D:ASN12 4.0 44.3 1.0 O D:GLY66 4.1 34.8 1.0 CB D:THR69 4.2 20.1 1.0 N D:GLY68 4.2 44.9 1.0 C D:GLY65 4.3 27.8 1.0 CG D:ASN12 4.3 42.2 1.0 CA D:GLY68 4.5 39.3 1.0 N D:ASP67 4.6 34.1 1.0 C D:GLY68 4.6 33.2 1.0 CA D:THR69 4.6 25.2 1.0 ND2 D:ASN12 4.7 49.3 1.0 CA D:GLY65 4.7 24.5 1.0 NZ D:LYS14 4.7 78.3 1.0 CA D:GLY94 4.9 58.0 1.0 CB D:ASN12 5.0 40.3 1.0

C.E.Nichols, H.K.Lamb, M.Lockyer, I.G.Charles, S.Pyne, A.R.Hawkins, D.K.Stammers. Characterization of Salmonella Typhimurium Yegs, A Putative Lipid Kinase Homologous to Eukaryotic Sphingosine and Diacylglycerol Kinases Proteins: V. 68 13 2007STRUCT.,Funct.,Genet..
ISSN: ISSN 0887-3585
PubMed: 17393457
DOI: 10.1002/PROT.21386