Chlorine in PDB 2pgc: Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution
Protein crystallography data
The structure of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution, PDB code: 2pgc
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.92 /
2.53
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
137.475,
139.935,
60.785,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
21.4 /
24.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution
(pdb code 2pgc). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution, PDB code: 2pgc:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 2pgc
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Chlorine Binding Sites List in 2pgc
Chlorine binding site 1 out
of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl207
b:74.8
occ:1.00
|
OH
|
A:TYR179
|
3.3
|
62.9
|
1.0
|
NH2
|
A:ARG200
|
3.3
|
54.4
|
1.0
|
NE
|
A:ARG200
|
3.4
|
54.6
|
1.0
|
OG1
|
A:THR118
|
3.5
|
52.6
|
1.0
|
OH
|
A:TYR188
|
3.6
|
81.1
|
1.0
|
CG2
|
A:THR118
|
3.7
|
48.0
|
1.0
|
CE1
|
A:TYR179
|
3.7
|
65.3
|
1.0
|
CZ
|
A:ARG200
|
3.8
|
53.8
|
1.0
|
CZ
|
A:TYR179
|
4.0
|
63.1
|
1.0
|
CB
|
A:THR118
|
4.1
|
50.6
|
1.0
|
CE1
|
A:TYR188
|
4.2
|
79.0
|
1.0
|
CZ
|
A:TYR188
|
4.4
|
80.7
|
1.0
|
CD
|
A:ARG200
|
4.6
|
49.0
|
1.0
|
CG2
|
A:VAL197
|
4.6
|
48.0
|
1.0
|
CD2
|
A:LEU182
|
4.7
|
76.5
|
1.0
|
CD1
|
A:TYR179
|
4.9
|
63.8
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 2pgc
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Chlorine Binding Sites List in 2pgc
Chlorine binding site 2 out
of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl207
b:69.7
occ:1.00
|
NE
|
B:ARG200
|
3.2
|
57.1
|
1.0
|
NH2
|
B:ARG200
|
3.3
|
58.3
|
1.0
|
OH
|
B:TYR179
|
3.3
|
61.6
|
1.0
|
CG2
|
B:THR118
|
3.6
|
48.1
|
1.0
|
OG1
|
B:THR118
|
3.6
|
54.5
|
1.0
|
CE1
|
B:TYR179
|
3.7
|
62.2
|
1.0
|
CZ
|
B:ARG200
|
3.7
|
55.1
|
1.0
|
CZ
|
B:TYR179
|
4.0
|
59.8
|
1.0
|
CB
|
B:THR118
|
4.1
|
51.6
|
1.0
|
CD
|
B:ARG200
|
4.4
|
50.7
|
1.0
|
CE1
|
B:TYR188
|
4.6
|
78.6
|
1.0
|
CD2
|
B:LEU182
|
4.7
|
77.1
|
1.0
|
CD1
|
B:TYR179
|
4.9
|
61.4
|
1.0
|
OH
|
B:TYR188
|
4.9
|
80.3
|
1.0
|
CD2
|
B:LEU165
|
5.0
|
54.5
|
1.0
|
NH1
|
B:ARG200
|
5.0
|
58.4
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 2pgc
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Chlorine Binding Sites List in 2pgc
Chlorine binding site 3 out
of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl207
b:74.1
occ:1.00
|
OH
|
C:TYR179
|
2.9
|
62.2
|
1.0
|
OG1
|
C:THR118
|
3.3
|
55.6
|
1.0
|
CG2
|
C:THR118
|
3.4
|
38.4
|
1.0
|
CE1
|
C:TYR179
|
3.6
|
66.6
|
1.0
|
NE
|
C:ARG200
|
3.6
|
48.1
|
1.0
|
NH2
|
C:ARG200
|
3.6
|
54.2
|
1.0
|
CZ
|
C:TYR179
|
3.7
|
65.6
|
1.0
|
CB
|
C:THR118
|
3.8
|
50.8
|
1.0
|
CZ
|
C:ARG200
|
4.1
|
51.4
|
1.0
|
CD2
|
C:LEU182
|
4.6
|
75.7
|
1.0
|
CD
|
C:ARG200
|
4.6
|
47.4
|
1.0
|
O
|
C:HOH211
|
4.6
|
51.6
|
1.0
|
CE1
|
C:TYR188
|
4.7
|
78.1
|
1.0
|
CD2
|
C:LEU165
|
4.9
|
53.3
|
1.0
|
CD1
|
C:TYR179
|
4.9
|
66.5
|
1.0
|
O
|
C:HOH226
|
4.9
|
58.4
|
1.0
|
CE2
|
C:TYR179
|
5.0
|
65.5
|
1.0
|
OH
|
C:TYR188
|
5.0
|
83.5
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 2pgc
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Chlorine Binding Sites List in 2pgc
Chlorine binding site 4 out
of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl207
b:78.8
occ:1.00
|
OG
|
D:SER46
|
3.2
|
59.8
|
1.0
|
NH2
|
D:ARG19
|
3.6
|
86.3
|
1.0
|
NH1
|
D:ARG19
|
3.6
|
87.3
|
1.0
|
O
|
C:HOH215
|
3.7
|
59.0
|
1.0
|
CB
|
D:SER46
|
4.0
|
52.6
|
1.0
|
CZ
|
D:ARG19
|
4.1
|
82.8
|
1.0
|
NH1
|
C:ARG200
|
4.1
|
60.2
|
1.0
|
O
|
D:ILE47
|
4.4
|
50.1
|
1.0
|
CD2
|
C:LEU183
|
4.6
|
76.6
|
1.0
|
CA
|
D:GLY48
|
4.6
|
50.3
|
1.0
|
CD1
|
C:LEU183
|
4.7
|
80.8
|
1.0
|
CA
|
D:GLY54
|
4.9
|
49.2
|
1.0
|
N
|
D:GLY54
|
4.9
|
48.9
|
1.0
|
CZ
|
C:ARG200
|
5.0
|
51.4
|
1.0
|
NH2
|
C:ARG200
|
5.0
|
54.2
|
1.0
|
C
|
D:ILE47
|
5.0
|
49.8
|
1.0
|
|
Chlorine binding site 5 out
of 6 in 2pgc
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Chlorine Binding Sites List in 2pgc
Chlorine binding site 5 out
of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl208
b:67.4
occ:1.00
|
NH2
|
D:ARG200
|
3.2
|
59.3
|
1.0
|
OH
|
D:TYR179
|
3.2
|
61.2
|
1.0
|
OG1
|
D:THR118
|
3.5
|
48.1
|
1.0
|
CG2
|
D:THR118
|
3.5
|
50.5
|
1.0
|
NE
|
D:ARG200
|
3.6
|
53.9
|
1.0
|
CE1
|
D:TYR179
|
3.8
|
66.2
|
1.0
|
CZ
|
D:ARG200
|
3.9
|
57.6
|
1.0
|
CZ
|
D:TYR179
|
4.0
|
62.7
|
1.0
|
CB
|
D:THR118
|
4.0
|
51.9
|
1.0
|
CE1
|
D:TYR188
|
4.3
|
79.8
|
1.0
|
OH
|
D:TYR188
|
4.6
|
79.9
|
1.0
|
CD2
|
D:LEU182
|
4.6
|
74.4
|
1.0
|
CG2
|
D:VAL197
|
4.7
|
49.3
|
1.0
|
CD
|
D:ARG200
|
4.8
|
49.2
|
1.0
|
CZ
|
D:TYR188
|
5.0
|
81.8
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 2pgc
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Chlorine Binding Sites List in 2pgc
Chlorine binding site 6 out
of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl207
b:72.4
occ:1.00
|
NH2
|
E:ARG200
|
3.2
|
52.3
|
1.0
|
NE
|
E:ARG200
|
3.5
|
53.5
|
1.0
|
OH
|
E:TYR179
|
3.6
|
66.9
|
1.0
|
OG1
|
E:THR118
|
3.6
|
51.5
|
1.0
|
CG2
|
E:THR118
|
3.6
|
46.2
|
1.0
|
CE1
|
E:TYR179
|
3.7
|
65.5
|
1.0
|
CZ
|
E:ARG200
|
3.8
|
52.9
|
1.0
|
CB
|
E:THR118
|
4.1
|
50.0
|
1.0
|
CZ
|
E:TYR179
|
4.1
|
62.2
|
1.0
|
CE1
|
E:TYR188
|
4.6
|
78.8
|
1.0
|
CD2
|
E:LEU182
|
4.7
|
78.0
|
1.0
|
CD
|
E:ARG200
|
4.8
|
49.8
|
1.0
|
CD1
|
E:TYR179
|
4.8
|
65.3
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 20 10:09:40 2024
|