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Chlorine in PDB 2pgc: Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution

Protein crystallography data

The structure of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution, PDB code: 2pgc was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.92 / 2.53
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 137.475, 139.935, 60.785, 90.00, 90.00, 90.00
R / Rfree (%) 21.4 / 24.6

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution (pdb code 2pgc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution, PDB code: 2pgc:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2pgc

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Chlorine binding site 1 out of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl207

b:74.8
occ:1.00
OH A:TYR179 3.3 62.9 1.0
NH2 A:ARG200 3.3 54.4 1.0
NE A:ARG200 3.4 54.6 1.0
OG1 A:THR118 3.5 52.6 1.0
OH A:TYR188 3.6 81.1 1.0
CG2 A:THR118 3.7 48.0 1.0
CE1 A:TYR179 3.7 65.3 1.0
CZ A:ARG200 3.8 53.8 1.0
CZ A:TYR179 4.0 63.1 1.0
CB A:THR118 4.1 50.6 1.0
CE1 A:TYR188 4.2 79.0 1.0
CZ A:TYR188 4.4 80.7 1.0
CD A:ARG200 4.6 49.0 1.0
CG2 A:VAL197 4.6 48.0 1.0
CD2 A:LEU182 4.7 76.5 1.0
CD1 A:TYR179 4.9 63.8 1.0

Chlorine binding site 2 out of 6 in 2pgc

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Chlorine binding site 2 out of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl207

b:69.7
occ:1.00
NE B:ARG200 3.2 57.1 1.0
NH2 B:ARG200 3.3 58.3 1.0
OH B:TYR179 3.3 61.6 1.0
CG2 B:THR118 3.6 48.1 1.0
OG1 B:THR118 3.6 54.5 1.0
CE1 B:TYR179 3.7 62.2 1.0
CZ B:ARG200 3.7 55.1 1.0
CZ B:TYR179 4.0 59.8 1.0
CB B:THR118 4.1 51.6 1.0
CD B:ARG200 4.4 50.7 1.0
CE1 B:TYR188 4.6 78.6 1.0
CD2 B:LEU182 4.7 77.1 1.0
CD1 B:TYR179 4.9 61.4 1.0
OH B:TYR188 4.9 80.3 1.0
CD2 B:LEU165 5.0 54.5 1.0
NH1 B:ARG200 5.0 58.4 1.0

Chlorine binding site 3 out of 6 in 2pgc

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Chlorine binding site 3 out of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl207

b:74.1
occ:1.00
OH C:TYR179 2.9 62.2 1.0
OG1 C:THR118 3.3 55.6 1.0
CG2 C:THR118 3.4 38.4 1.0
CE1 C:TYR179 3.6 66.6 1.0
NE C:ARG200 3.6 48.1 1.0
NH2 C:ARG200 3.6 54.2 1.0
CZ C:TYR179 3.7 65.6 1.0
CB C:THR118 3.8 50.8 1.0
CZ C:ARG200 4.1 51.4 1.0
CD2 C:LEU182 4.6 75.7 1.0
CD C:ARG200 4.6 47.4 1.0
O C:HOH211 4.6 51.6 1.0
CE1 C:TYR188 4.7 78.1 1.0
CD2 C:LEU165 4.9 53.3 1.0
CD1 C:TYR179 4.9 66.5 1.0
O C:HOH226 4.9 58.4 1.0
CE2 C:TYR179 5.0 65.5 1.0
OH C:TYR188 5.0 83.5 1.0

Chlorine binding site 4 out of 6 in 2pgc

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Chlorine binding site 4 out of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl207

b:78.8
occ:1.00
OG D:SER46 3.2 59.8 1.0
NH2 D:ARG19 3.6 86.3 1.0
NH1 D:ARG19 3.6 87.3 1.0
O C:HOH215 3.7 59.0 1.0
CB D:SER46 4.0 52.6 1.0
CZ D:ARG19 4.1 82.8 1.0
NH1 C:ARG200 4.1 60.2 1.0
O D:ILE47 4.4 50.1 1.0
CD2 C:LEU183 4.6 76.6 1.0
CA D:GLY48 4.6 50.3 1.0
CD1 C:LEU183 4.7 80.8 1.0
CA D:GLY54 4.9 49.2 1.0
N D:GLY54 4.9 48.9 1.0
CZ C:ARG200 5.0 51.4 1.0
NH2 C:ARG200 5.0 54.2 1.0
C D:ILE47 5.0 49.8 1.0

Chlorine binding site 5 out of 6 in 2pgc

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Chlorine binding site 5 out of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl208

b:67.4
occ:1.00
NH2 D:ARG200 3.2 59.3 1.0
OH D:TYR179 3.2 61.2 1.0
OG1 D:THR118 3.5 48.1 1.0
CG2 D:THR118 3.5 50.5 1.0
NE D:ARG200 3.6 53.9 1.0
CE1 D:TYR179 3.8 66.2 1.0
CZ D:ARG200 3.9 57.6 1.0
CZ D:TYR179 4.0 62.7 1.0
CB D:THR118 4.0 51.9 1.0
CE1 D:TYR188 4.3 79.8 1.0
OH D:TYR188 4.6 79.9 1.0
CD2 D:LEU182 4.6 74.4 1.0
CG2 D:VAL197 4.7 49.3 1.0
CD D:ARG200 4.8 49.2 1.0
CZ D:TYR188 5.0 81.8 1.0

Chlorine binding site 6 out of 6 in 2pgc

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Chlorine binding site 6 out of 6 in the Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of A A Marine Metagenome Protein (JCVI_PEP_1096685590403) From Uncultured Marine Organism at 2.53 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl207

b:72.4
occ:1.00
NH2 E:ARG200 3.2 52.3 1.0
NE E:ARG200 3.5 53.5 1.0
OH E:TYR179 3.6 66.9 1.0
OG1 E:THR118 3.6 51.5 1.0
CG2 E:THR118 3.6 46.2 1.0
CE1 E:TYR179 3.7 65.5 1.0
CZ E:ARG200 3.8 52.9 1.0
CB E:THR118 4.1 50.0 1.0
CZ E:TYR179 4.1 62.2 1.0
CE1 E:TYR188 4.6 78.8 1.0
CD2 E:LEU182 4.7 78.0 1.0
CD E:ARG200 4.8 49.8 1.0
CD1 E:TYR179 4.8 65.3 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Thu Jul 10 23:51:39 2025

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