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Chlorine in PDB 2phd: Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans

Enzymatic activity of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans

All present enzymatic activity of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans:
1.13.11.4;

Protein crystallography data

The structure of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans, PDB code: 2phd was solved by I.Matera, M.Ferraroni, F.Briganti, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 133.016, 133.016, 190.748, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 26.2

Other elements in 2phd:

The structure of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans (pdb code 2phd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans, PDB code: 2phd:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2phd

Go back to Chlorine Binding Sites List in 2phd
Chlorine binding site 1 out of 4 in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1

b:42.1
occ:1.00
 O A:HOH376 2.4 24.4 1.0
O A:HOH390 2.7 22.8 1.0
OE1 A:GLU282 3.2 31.0 1.0
OE2 A:GLU282 3.2 33.0 1.0
NH1 A:ARG347 3.2 34.6 1.0
NH1 A:ARG265 3.5 29.0 1.0
CD A:GLU282 3.6 34.0 1.0
CD1 D:LEU219 3.9 32.2 1.0
O A:HOH387 4.1 27.0 1.0
O A:HOH398 4.2 31.7 1.0
CZ A:ARG347 4.5 30.8 1.0
CZ A:ARG265 4.7 28.6 1.0
CD2 D:LEU219 4.8 33.6 1.0
NH2 A:ARG347 4.8 28.4 1.0
CG D:LEU219 4.9 33.8 1.0
OE2 A:GLU297 4.9 39.0 1.0

Chlorine binding site 2 out of 4 in 2phd

Go back to Chlorine Binding Sites List in 2phd
Chlorine binding site 2 out of 4 in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2

b:32.2
occ:1.00
 O B:HOH408 2.7 15.7 1.0
O B:HOH379 2.9 12.3 1.0
OE2 B:GLU282 3.6 33.5 1.0
NH1 B:ARG347 3.7 33.1 1.0
OE1 B:GLU282 3.9 31.9 1.0
CD1 C:LEU219 4.0 31.4 1.0
NH1 B:ARG265 4.0 23.4 1.0
CD B:GLU282 4.2 33.3 1.0
NH2 B:ARG295 4.7 36.9 1.0
CZ B:ARG347 4.8 29.3 1.0
OE2 B:GLU297 4.9 36.0 1.0
CD2 C:LEU219 4.9 32.5 1.0

Chlorine binding site 3 out of 4 in 2phd

Go back to Chlorine Binding Sites List in 2phd
Chlorine binding site 3 out of 4 in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl4

b:50.2
occ:1.00
 O C:HOH414 2.5 6.2 1.0
OE2 C:GLU297 2.7 41.7 1.0
NH1 C:ARG347 3.2 33.4 1.0
O C:HOH383 3.5 14.0 1.0
NH2 C:ARG295 3.6 39.3 1.0
CD C:GLU297 3.6 41.5 1.0
OE1 C:GLU297 3.7 41.5 1.0
CZ C:ARG295 3.8 39.1 1.0
NH2 C:ARG347 4.0 27.8 1.0
NE C:ARG295 4.0 41.1 1.0
CZ C:ARG347 4.0 30.6 1.0
CD C:ARG295 4.1 41.2 1.0
NH1 C:ARG295 4.4 37.5 1.0
CZ2 C:TRP335 4.6 36.1 1.0
OE1 C:GLU282 4.7 33.1 1.0

Chlorine binding site 4 out of 4 in 2phd

Go back to Chlorine Binding Sites List in 2phd
Chlorine binding site 4 out of 4 in the Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure Determination of A Salicylate 1,2- Dioxygenase From Pseudaminobacter Salicylatoxidans within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl3

b:48.1
occ:1.00
 O D:HOH393 2.7 44.8 1.0
NH1 D:ARG347 3.1 33.7 1.0
O A:HOH389 3.1 24.6 1.0
OE2 D:GLU282 3.2 35.1 1.0
OE1 D:GLU282 3.4 33.6 1.0
CD D:GLU282 3.7 35.3 1.0
CD1 A:LEU219 3.9 32.4 1.0
NH1 D:ARG265 4.0 27.1 1.0
CZ D:ARG347 4.3 32.1 1.0
NH2 D:ARG347 4.7 31.6 1.0
OE2 D:GLU297 4.8 38.9 1.0

Reference:

M.Ferraroni, I.Matera, F.Briganti, A.Stolz, S.Burger. Crystal Structure Determination of A Salicylate 1,2-Dioxygenase From Pseudaminobacter Salicylatoxidans To Be Published.
Page generated: Sat Jul 20 10:10:33 2024

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