Chlorine in PDB 2pkd: Crystal Structure of CD84: Insite Into Slam Family Function

The structure of Crystal Structure of CD84: Insite Into Slam Family Function, PDB code: 2pkd was solved by Q.Yan, V.N.Malashkevich, A.Fedorov, E.Cao, J.W.Lary, J.L.Cole, S.G.Nathenson, S.C.Almo, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	20.00 / 2.04
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	61.013, 170.982, 148.527, 90.00, 90.00, 90.00
R / Rfree (%)	19.7 / 27.7

The binding sites of Chlorine atom in the Crystal Structure of CD84: Insite Into Slam Family Function (pdb code 2pkd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of CD84: Insite Into Slam Family Function, PDB code: 2pkd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Crystal Structure of CD84: Insite Into Slam Family Function


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of CD84: Insite Into Slam Family Function within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl500 b:37.3 occ:1.00 N C:ARG110 3.2 35.6 1.0 NH1 C:ARG110 3.4 41.5 1.0 CD C:ARG110 3.5 46.1 1.0 CB C:ARG110 3.6 38.9 1.0 CD1 C:TYR109 3.8 29.5 1.0 CA C:TYR109 3.9 31.7 1.0 CG C:ARG110 3.9 43.1 1.0 CB C:TYR109 3.9 31.1 1.0 CA C:ARG110 4.0 38.4 1.0 C C:TYR109 4.1 33.9 1.0 CD A:ARG111 4.1 33.5 1.0 O A:HOH190 4.2 56.4 1.0 CB A:ARG111 4.3 36.1 1.0 NE C:ARG110 4.3 43.8 1.0 CZ C:ARG110 4.3 41.0 1.0 CG C:TYR109 4.4 29.9 1.0 CG A:ARG111 4.5 33.5 1.0 O C:HOH522 4.6 57.3 1.0 NE A:ARG111 4.7 36.0 1.0 CE1 C:TYR109 4.8 31.9 1.0

Chlorine binding site 2 out of 2 in the Crystal Structure of CD84: Insite Into Slam Family Function


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of CD84: Insite Into Slam Family Function within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl600 b:41.3 occ:1.00 N E:ARG110 3.4 38.5 1.0 NH1 E:ARG110 3.5 50.0 1.0 CD1 E:TYR109 3.7 32.6 1.0 CG E:ARG110 3.8 42.7 1.0 CD E:ARG110 3.8 45.4 1.0 CA E:TYR109 3.9 35.0 1.0 CB E:ARG110 3.9 41.2 1.0 O E:HOH664 3.9 66.9 1.0 CB E:TYR109 4.0 35.2 1.0 C E:TYR109 4.2 36.2 1.0 CG E:TYR109 4.3 34.8 1.0 CA E:ARG110 4.3 41.2 1.0 CZ E:ARG110 4.4 49.2 1.0 NE E:ARG110 4.5 47.7 1.0 CE1 E:TYR109 4.7 34.1 1.0

Q.Yan, V.N.Malashkevich, A.Fedorov, E.Fedorov, E.Cao, J.W.Lary, J.L.Cole, S.G.Nathenson, S.C.Almo. Structure of CD84 Provides Insight Into Slam Family Function. Proc.Natl.Acad.Sci.Usa V. 104 10583 2007.
ISSN: ISSN 0027-8424
PubMed: 17563375
DOI: 10.1073/PNAS.0703893104