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Chlorine in PDB 2pmf: The Crystal Structure of A Human Glycyl-Trna Synthetase Mutant

Enzymatic activity of The Crystal Structure of A Human Glycyl-Trna Synthetase Mutant

All present enzymatic activity of The Crystal Structure of A Human Glycyl-Trna Synthetase Mutant:
6.1.1.14;

Protein crystallography data

The structure of The Crystal Structure of A Human Glycyl-Trna Synthetase Mutant, PDB code: 2pmf was solved by W.Xie, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.24 / 2.85
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 91.412, 91.412, 246.814, 90.00, 90.00, 90.00
R / Rfree (%) 23.1 / 27.1

Chlorine Binding Sites:

The binding sites of Chlorine atom in the The Crystal Structure of A Human Glycyl-Trna Synthetase Mutant (pdb code 2pmf). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the The Crystal Structure of A Human Glycyl-Trna Synthetase Mutant, PDB code: 2pmf:

Chlorine binding site 1 out of 1 in 2pmf

Go back to Chlorine Binding Sites List in 2pmf
Chlorine binding site 1 out of 1 in the The Crystal Structure of A Human Glycyl-Trna Synthetase Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of The Crystal Structure of A Human Glycyl-Trna Synthetase Mutant within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl901

b:51.7
occ:1.00
N A:GLY528 3.1 26.2 1.0
O A:HOH1103 3.1 50.3 1.0
N A:ARG529 3.2 27.3 1.0
NE A:ARG526 3.2 55.9 1.0
CA A:GLY528 3.4 24.2 1.0
C A:ARG526 3.5 32.9 1.0
CB A:ARG526 3.6 37.5 1.0
O A:ARG526 3.6 26.2 1.0
CA A:ARG526 3.7 31.0 1.0
C A:GLY528 3.8 31.7 1.0
N A:LEU527 3.8 28.3 1.0
CB A:PHE292 3.9 31.0 1.0
NH2 A:ARG526 3.9 55.5 1.0
CG A:ARG529 3.9 35.7 1.0
CZ A:ARG526 4.0 56.7 1.0
CD A:ARG526 4.1 50.6 1.0
C A:LEU527 4.1 26.9 1.0
CB A:ARG529 4.2 35.5 1.0
CA A:ARG529 4.3 33.6 1.0
CG A:PHE292 4.3 31.7 1.0
O A:THR293 4.3 37.1 1.0
CD2 A:PHE292 4.3 30.3 1.0
CG A:ARG526 4.4 43.9 1.0
CA A:LEU527 4.5 26.1 1.0
CD A:ARG529 4.6 38.2 1.0
O A:HOH911 4.7 36.3 1.0
O A:GLY528 5.0 29.2 1.0
CG2 A:VAL289 5.0 27.0 1.0
O A:LEU286 5.0 37.6 1.0

Reference:

W.Xie, L.A.Nangle, W.Zhang, P.Schimmel, X.L.Yang. Long-Range Structural Effects of A Charcot-Marie- Tooth Disease-Causing Mutation in Human Glycyl-Trna Synthetase. Proc.Natl.Acad.Sci.Usa V. 104 9976 2007.
ISSN: ISSN 0027-8424
PubMed: 17545306
DOI: 10.1073/PNAS.0703908104
Page generated: Thu Jul 10 23:53:19 2025

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