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Chlorine in PDB 2q5t: Full-Length Cholix Toxin From Vibrio Cholerae

Protein crystallography data

The structure of Full-Length Cholix Toxin From Vibrio Cholerae, PDB code: 2q5t was solved by R.Jorgensen, R.J.Fieldhouse, A.R.Merrill, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 33.31 / 2.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 50.936, 88.338, 79.934, 90.00, 95.32, 90.00
R / Rfree (%) 19.1 / 23.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Full-Length Cholix Toxin From Vibrio Cholerae (pdb code 2q5t). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Full-Length Cholix Toxin From Vibrio Cholerae, PDB code: 2q5t:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2q5t

Go back to Chlorine Binding Sites List in 2q5t
Chlorine binding site 1 out of 2 in the Full-Length Cholix Toxin From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Full-Length Cholix Toxin From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl801

b:44.2
occ:1.00
O A:HOH1194 3.4 15.2 1.0
O A:HOH1198 3.4 19.8 1.0
OG A:SER319 3.4 13.2 1.0
C1 A:EDO904 3.6 14.1 1.0
CB A:SER319 3.9 13.3 1.0
CB A:LEU317 4.0 11.6 1.0
C2 A:EDO904 4.1 13.0 1.0
N A:SER319 4.1 12.1 1.0
CD1 A:LEU317 4.3 12.7 1.0
OH A:TYR365 4.5 8.9 1.0
N A:PHE318 4.5 11.1 1.0
CG A:LEU317 4.5 12.0 1.0
CA A:SER319 4.7 13.2 1.0
CD2 A:LEU317 4.7 12.2 1.0
O2 A:EDO904 4.9 13.3 1.0
CA A:LEU317 4.9 11.2 1.0
O1 A:EDO904 4.9 8.4 1.0
CE2 A:TYR365 5.0 7.3 1.0
C A:LEU317 5.0 11.5 1.0

Chlorine binding site 2 out of 2 in 2q5t

Go back to Chlorine Binding Sites List in 2q5t
Chlorine binding site 2 out of 2 in the Full-Length Cholix Toxin From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Full-Length Cholix Toxin From Vibrio Cholerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl802

b:39.9
occ:1.00
O A:HOH1205 3.2 25.1 1.0
O A:HOH1110 3.6 14.0 1.0
O2 A:EDO901 3.7 11.3 1.0
O1 A:EDO901 3.9 7.1 1.0
CG A:TYR504 4.1 8.5 1.0
CB A:TYR493 4.2 8.5 1.0
CB A:TYR504 4.3 9.4 1.0
CD2 A:TYR504 4.3 9.0 1.0
CE1 A:HIS460 4.3 7.8 1.0
CD1 A:TYR504 4.4 9.4 1.0
O A:HOH1172 4.4 32.0 1.0
O A:HOH955 4.5 7.5 1.0
O A:GLY461 4.6 8.7 1.0
C1 A:EDO901 4.6 9.3 1.0
CG A:TYR493 4.7 9.5 1.0
C2 A:EDO901 4.7 10.4 1.0
ND1 A:HIS460 4.8 8.6 1.0
CE2 A:TYR504 4.8 8.9 1.0
CE1 A:TYR504 4.9 9.7 1.0
O A:HOH1232 5.0 25.6 1.0

Reference:

R.Jorgensen, A.E.Purdy, R.J.Fieldhouse, M.S.Kimber, D.H.Bartlett, A.R.Merrill. Cholix Toxin, A Novel Adp-Ribosylating Factor From Vibrio Cholerae. J.Biol.Chem. V. 283 10671 2008.
ISSN: ISSN 0021-9258
PubMed: 18276581
DOI: 10.1074/JBC.M710008200
Page generated: Sat Dec 12 09:16:17 2020

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