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Chlorine in PDB 2q9o: Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase

Enzymatic activity of Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase

All present enzymatic activity of Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase:
1.10.3.2;

Protein crystallography data

The structure of Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase, PDB code: 2q9o was solved by N.Hakulinen, J.Rouvinen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 15.00 / 1.30
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 173.740, 61.900, 124.210, 90.00, 96.36, 90.00
R / Rfree (%) 16.7 / 21.2

Other elements in 2q9o:

The structure of Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase also contains other interesting chemical elements:

Copper (Cu) 8 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase (pdb code 2q9o). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase, PDB code: 2q9o:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2q9o

Go back to Chlorine Binding Sites List in 2q9o
Chlorine binding site 1 out of 2 in the Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl2010

b:15.2
occ:1.00
CU A:CU2004 2.5 10.1 1.0
O A:HOH4107 3.1 14.6 1.0
N A:GLY96 3.1 9.3 1.0
NE2 A:HIS93 3.2 7.2 1.0
O A:HOH4092 3.2 13.1 1.0
CE1 A:HIS93 3.3 6.9 1.0
NE2 A:HIS434 3.4 6.6 1.0
CE1 A:HIS434 3.4 7.6 1.0
CA A:HIS436 3.7 5.3 1.0
CA A:HIS95 3.8 7.3 1.0
O A:TRP94 3.9 7.5 1.0
C A:HIS95 3.9 7.9 1.0
O A:LEU435 4.0 5.8 1.0
CA A:GLY96 4.1 10.2 1.0
CB A:HIS436 4.3 6.2 1.0
CG A:HIS436 4.3 7.1 1.0
N A:GLY437 4.3 6.2 1.0
O A:ILE97 4.3 10.4 1.0
N A:ILE97 4.4 9.3 1.0
CD2 A:HIS436 4.5 6.7 1.0
CD2 A:HIS93 4.5 6.8 1.0
N A:HIS436 4.5 4.9 1.0
C A:HIS436 4.5 5.3 1.0
C A:GLY96 4.5 9.8 1.0
ND1 A:HIS93 4.6 6.9 1.0
CG A:HIS95 4.6 8.2 1.0
C A:LEU435 4.6 4.9 1.0
CB A:HIS95 4.6 8.2 1.0
C A:TRP94 4.7 6.7 1.0
CD2 A:HIS434 4.7 6.4 1.0
ND1 A:HIS434 4.7 7.3 1.0
N A:HIS95 4.7 6.9 1.0
ND1 A:HIS436 4.8 6.9 1.0
CD2 A:HIS95 4.8 8.9 1.0
O2 A:OXY4006 4.8 26.0 1.0
OD1 A:ASP106 4.9 7.7 1.0
C A:ILE97 5.0 8.0 1.0

Chlorine binding site 2 out of 2 in 2q9o

Go back to Chlorine Binding Sites List in 2q9o
Chlorine binding site 2 out of 2 in the Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Near-Atomic Resolution Structure of A Melanocarpus Albomyces Laccase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl2010

b:15.4
occ:1.00
CU B:CU2004 2.5 10.6 1.0
O B:HOH4160 3.0 12.9 1.0
N B:GLY96 3.1 8.6 1.0
NE2 B:HIS93 3.3 7.6 1.0
O B:HOH4064 3.3 13.2 1.0
NE2 B:HIS434 3.3 6.8 1.0
CE1 B:HIS93 3.4 7.6 1.0
CE1 B:HIS434 3.4 7.7 1.0
CA B:HIS436 3.7 6.3 1.0
CA B:HIS95 3.8 7.9 1.0
O B:TRP94 3.9 7.8 1.0
C B:HIS95 4.0 8.4 1.0
O B:LEU435 4.0 6.2 1.0
CA B:GLY96 4.1 9.5 1.0
N B:GLY437 4.3 7.2 1.0
CG B:HIS436 4.3 6.8 1.0
CB B:HIS436 4.3 6.5 1.0
N B:ILE97 4.4 8.8 1.0
O B:ILE97 4.4 10.2 1.0
CD2 B:HIS436 4.5 6.8 1.0
N B:HIS436 4.5 6.2 1.0
C B:GLY96 4.5 9.0 1.0
C B:HIS436 4.5 7.0 1.0
CD2 B:HIS93 4.6 7.6 1.0
C B:LEU435 4.6 6.0 1.0
CG B:HIS95 4.6 7.5 1.0
CD2 B:HIS434 4.6 6.9 1.0
C B:TRP94 4.7 6.8 1.0
ND1 B:HIS93 4.7 6.8 1.0
CB B:HIS95 4.7 8.4 1.0
ND1 B:HIS434 4.7 7.3 1.0
CD2 B:HIS95 4.7 7.1 1.0
N B:HIS95 4.7 7.1 1.0
ND1 B:HIS436 4.8 6.5 1.0
OD1 B:ASP106 4.9 7.7 1.0

Reference:

N.Hakulinen, M.Andberg, J.Kallio, A.Koivula, K.Kruus, J.Rouvinen. A Near Atomic Resolution Structure of A Melanocarpus Albomyces Laccase. J.Struct.Biol. V. 162 29 2008.
ISSN: ISSN 1047-8477
PubMed: 18249560
DOI: 10.1016/J.JSB.2007.12.003
Page generated: Sat Dec 12 09:16:40 2020

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