Chlorine in PDB 2qjv: Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
Protein crystallography data
The structure of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution, PDB code: 2qjv
was solved by
Joint Center For Structural Genomics (Jcsg),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.51 /
1.90
|
Space group
|
I 2 3
|
Cell size a, b, c (Å), α, β, γ (°)
|
200.140,
200.140,
200.140,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16 /
18.1
|
Other elements in 2qjv:
The structure of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
(pdb code 2qjv). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the
Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution, PDB code: 2qjv:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
Chlorine binding site 1 out
of 7 in 2qjv
Go back to
Chlorine Binding Sites List in 2qjv
Chlorine binding site 1 out
of 7 in the Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl272
b:62.6
occ:1.00
|
O
|
A:HOH383
|
2.9
|
35.1
|
1.0
|
NE
|
A:ARG252
|
3.1
|
71.4
|
1.0
|
N
|
A:GLY178
|
3.1
|
43.8
|
1.0
|
O
|
A:HOH522
|
3.5
|
48.6
|
1.0
|
CD
|
A:ARG252
|
3.7
|
58.4
|
1.0
|
CA
|
A:GLY178
|
3.8
|
45.2
|
1.0
|
CZ
|
A:ARG252
|
3.9
|
76.8
|
1.0
|
CD2
|
A:LEU248
|
4.0
|
41.2
|
1.0
|
NH2
|
A:ARG252
|
4.0
|
76.5
|
1.0
|
CA
|
A:GLU177
|
4.1
|
44.9
|
1.0
|
C
|
A:GLU177
|
4.1
|
42.7
|
1.0
|
CG2
|
A:THR181
|
4.4
|
35.2
|
1.0
|
O
|
A:VAL176
|
4.5
|
35.5
|
1.0
|
C
|
A:GLY178
|
4.6
|
44.9
|
1.0
|
O
|
A:HOH636
|
4.6
|
61.7
|
1.0
|
O
|
A:GLU180
|
4.6
|
31.8
|
1.0
|
N
|
A:GLN179
|
4.6
|
41.0
|
1.0
|
CG
|
A:GLU177
|
4.8
|
51.9
|
1.0
|
O
|
A:HOH535
|
4.9
|
49.4
|
1.0
|
CG
|
A:ARG252
|
4.9
|
44.1
|
1.0
|
N
|
A:GLU177
|
4.9
|
40.7
|
1.0
|
NH1
|
A:ARG252
|
5.0
|
83.1
|
1.0
|
|
Chlorine binding site 2 out
of 7 in 2qjv
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Chlorine Binding Sites List in 2qjv
Chlorine binding site 2 out
of 7 in the Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl273
b:69.8
occ:1.00
|
O
|
A:HOH614
|
3.4
|
57.4
|
1.0
|
O
|
A:HOH540
|
3.9
|
49.9
|
1.0
|
OH
|
A:TYR84
|
3.9
|
44.5
|
1.0
|
O
|
A:HOH455
|
4.1
|
42.4
|
1.0
|
CE2
|
A:TYR84
|
4.4
|
40.2
|
1.0
|
CZ
|
A:TYR84
|
4.4
|
44.3
|
1.0
|
O
|
A:ARG70
|
4.5
|
36.4
|
0.5
|
O
|
A:ARG70
|
4.6
|
36.8
|
0.5
|
CG2
|
A:ILE71
|
4.8
|
35.6
|
1.0
|
CA
|
A:ILE71
|
4.9
|
37.2
|
1.0
|
|
Chlorine binding site 3 out
of 7 in 2qjv
Go back to
Chlorine Binding Sites List in 2qjv
Chlorine binding site 3 out
of 7 in the Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl274
b:50.1
occ:1.00
|
NH1
|
A:ARG137
|
2.8
|
73.3
|
1.0
|
NE
|
A:ARG130
|
3.1
|
49.6
|
0.5
|
N
|
A:SER166
|
3.2
|
39.0
|
1.0
|
NH2
|
A:ARG130
|
3.2
|
44.2
|
0.5
|
CZ
|
A:ARG130
|
3.5
|
55.8
|
0.5
|
CZ
|
A:ARG137
|
3.6
|
70.9
|
1.0
|
CD
|
A:ARG137
|
3.7
|
68.6
|
1.0
|
CA
|
A:SER166
|
3.8
|
40.5
|
1.0
|
NE
|
A:ARG137
|
3.9
|
68.2
|
1.0
|
CB
|
A:SER165
|
4.1
|
37.6
|
1.0
|
OH
|
A:TYR240
|
4.1
|
40.4
|
1.0
|
C
|
A:SER165
|
4.2
|
37.6
|
1.0
|
CD
|
A:ARG130
|
4.3
|
51.8
|
0.5
|
CA
|
A:SER165
|
4.3
|
39.0
|
1.0
|
NH1
|
A:ARG130
|
4.3
|
63.7
|
0.5
|
CD
|
A:ARG130
|
4.4
|
61.3
|
0.5
|
OG
|
A:SER166
|
4.4
|
44.2
|
1.0
|
CG1
|
A:VAL157
|
4.5
|
28.6
|
1.0
|
NH2
|
A:ARG137
|
4.6
|
74.6
|
1.0
|
O
|
A:HOH429
|
4.6
|
39.5
|
1.0
|
N
|
A:TRP167
|
4.6
|
36.7
|
1.0
|
CG
|
A:ARG130
|
4.7
|
53.1
|
0.5
|
NH1
|
A:ARG130
|
4.8
|
61.4
|
0.5
|
CB
|
A:SER166
|
4.8
|
41.3
|
1.0
|
C
|
A:SER166
|
4.8
|
37.5
|
1.0
|
CG
|
A:ARG137
|
4.9
|
55.2
|
1.0
|
CG2
|
A:VAL157
|
4.9
|
33.2
|
1.0
|
OG
|
A:SER165
|
5.0
|
39.1
|
1.0
|
|
Chlorine binding site 4 out
of 7 in 2qjv
Go back to
Chlorine Binding Sites List in 2qjv
Chlorine binding site 4 out
of 7 in the Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl275
b:41.8
occ:1.00
|
O
|
A:HOH308
|
2.9
|
25.7
|
1.0
|
OG
|
A:SER66
|
3.0
|
43.1
|
1.0
|
N
|
A:ASP65
|
3.2
|
37.5
|
1.0
|
CB
|
A:ALA64
|
3.6
|
37.2
|
1.0
|
N
|
A:SER66
|
3.7
|
37.8
|
1.0
|
CB
|
A:ASP65
|
3.8
|
36.8
|
1.0
|
CA
|
A:ASP65
|
3.8
|
36.9
|
1.0
|
CB
|
A:SER66
|
3.8
|
39.3
|
1.0
|
C
|
A:ASP65
|
3.8
|
36.5
|
1.0
|
O
|
A:ALA63
|
4.1
|
35.7
|
1.0
|
C
|
A:ALA64
|
4.3
|
38.9
|
1.0
|
CB
|
A:VAL117
|
4.3
|
37.8
|
1.0
|
CA
|
A:SER66
|
4.3
|
39.1
|
1.0
|
CA
|
A:ALA64
|
4.5
|
37.6
|
1.0
|
OD2
|
A:ASP65
|
4.5
|
59.0
|
1.0
|
O
|
A:HOH380
|
4.6
|
35.0
|
1.0
|
CG2
|
A:VAL117
|
4.6
|
32.2
|
1.0
|
CG
|
A:ASP65
|
4.6
|
44.6
|
1.0
|
O
|
A:ASP65
|
4.7
|
34.1
|
1.0
|
O
|
A:HOH577
|
4.8
|
52.6
|
1.0
|
O
|
A:HOH377
|
5.0
|
34.8
|
1.0
|
CG1
|
A:VAL117
|
5.0
|
34.1
|
1.0
|
O
|
A:HOH603
|
5.0
|
55.5
|
1.0
|
|
Chlorine binding site 5 out
of 7 in 2qjv
Go back to
Chlorine Binding Sites List in 2qjv
Chlorine binding site 5 out
of 7 in the Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl272
b:65.7
occ:1.00
|
N
|
B:GLU47
|
3.3
|
38.5
|
1.0
|
CB
|
B:GLU47
|
3.6
|
41.1
|
1.0
|
CB
|
B:ASP46
|
3.6
|
39.0
|
1.0
|
CG
|
B:GLU47
|
3.9
|
50.6
|
1.0
|
CA
|
B:GLU47
|
3.9
|
38.8
|
1.0
|
CG
|
B:ASP46
|
4.0
|
39.5
|
1.0
|
OD2
|
B:ASP46
|
4.2
|
42.3
|
1.0
|
C
|
B:GLU47
|
4.3
|
37.9
|
1.0
|
CG
|
B:ARG48
|
4.3
|
47.4
|
1.0
|
C
|
B:ASP46
|
4.3
|
40.2
|
1.0
|
N
|
B:ARG48
|
4.4
|
38.3
|
1.0
|
CA
|
B:ASP46
|
4.5
|
41.8
|
1.0
|
CD
|
B:ARG48
|
4.5
|
48.4
|
1.0
|
OD1
|
B:ASP46
|
4.5
|
42.3
|
1.0
|
O
|
B:HOH447
|
4.8
|
41.7
|
1.0
|
O
|
B:HOH352
|
4.9
|
32.3
|
1.0
|
O
|
B:GLU47
|
4.9
|
39.4
|
1.0
|
|
Chlorine binding site 6 out
of 7 in 2qjv
Go back to
Chlorine Binding Sites List in 2qjv
Chlorine binding site 6 out
of 7 in the Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl273
b:54.4
occ:1.00
|
NH1
|
B:ARG137
|
2.9
|
77.5
|
1.0
|
N
|
B:SER166
|
3.1
|
38.0
|
1.0
|
CD
|
B:ARG137
|
3.5
|
66.4
|
1.0
|
CA
|
B:SER166
|
3.7
|
39.2
|
1.0
|
CZ
|
B:ARG137
|
3.7
|
75.0
|
1.0
|
NH2
|
B:ARG130
|
3.7
|
75.9
|
1.0
|
NE
|
B:ARG137
|
3.9
|
68.2
|
1.0
|
OH
|
B:TYR240
|
4.0
|
38.0
|
1.0
|
CB
|
B:SER165
|
4.0
|
38.4
|
1.0
|
NE
|
B:ARG130
|
4.2
|
71.5
|
1.0
|
C
|
B:SER165
|
4.2
|
38.2
|
1.0
|
CA
|
B:SER165
|
4.3
|
38.5
|
1.0
|
OG
|
B:SER166
|
4.3
|
39.9
|
1.0
|
CG1
|
B:VAL157
|
4.4
|
32.9
|
1.0
|
CZ
|
B:ARG130
|
4.5
|
77.4
|
1.0
|
O
|
B:HOH373
|
4.5
|
34.6
|
1.0
|
N
|
B:TRP167
|
4.6
|
36.8
|
1.0
|
O
|
B:HOH577
|
4.6
|
55.2
|
1.0
|
CG
|
B:ARG137
|
4.7
|
52.9
|
1.0
|
CB
|
B:SER166
|
4.7
|
41.7
|
1.0
|
C
|
B:SER166
|
4.7
|
37.4
|
1.0
|
NH2
|
B:ARG137
|
4.8
|
74.3
|
1.0
|
OG
|
B:SER165
|
4.9
|
41.1
|
1.0
|
CG2
|
B:VAL157
|
4.9
|
35.0
|
1.0
|
|
Chlorine binding site 7 out
of 7 in 2qjv
Go back to
Chlorine Binding Sites List in 2qjv
Chlorine binding site 7 out
of 7 in the Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of An Iolb-Like Protein (STM4420) From Salmonella Typhimurium LT2 at 1.90 A Resolution within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl274
b:60.5
occ:1.00
|
O
|
B:HOH386
|
2.9
|
35.4
|
1.0
|
N
|
B:GLY178
|
3.0
|
42.5
|
1.0
|
NE
|
B:ARG252
|
3.2
|
66.5
|
1.0
|
CD
|
B:ARG252
|
3.7
|
48.0
|
1.0
|
CA
|
B:GLY178
|
3.8
|
42.3
|
1.0
|
CA
|
B:GLU177
|
3.9
|
43.8
|
1.0
|
C
|
B:GLU177
|
4.0
|
40.6
|
1.0
|
CZ
|
B:ARG252
|
4.1
|
76.4
|
1.0
|
CD2
|
B:LEU248
|
4.1
|
40.2
|
1.0
|
NH2
|
B:ARG252
|
4.2
|
77.4
|
1.0
|
O
|
B:VAL176
|
4.5
|
36.8
|
1.0
|
O
|
B:HOH575
|
4.5
|
54.5
|
1.0
|
CG2
|
B:THR181
|
4.5
|
36.5
|
1.0
|
C
|
B:GLY178
|
4.6
|
43.3
|
1.0
|
CG
|
B:GLU177
|
4.6
|
46.4
|
1.0
|
N
|
B:GLN179
|
4.7
|
40.2
|
0.5
|
O
|
B:GLU180
|
4.7
|
31.2
|
1.0
|
N
|
B:GLN179
|
4.7
|
41.2
|
0.5
|
N
|
B:GLU177
|
4.8
|
40.4
|
1.0
|
CB
|
B:GLU177
|
4.9
|
43.5
|
1.0
|
CG
|
B:ARG252
|
4.9
|
44.0
|
1.0
|
|
Reference:
Joint Center For Structural Genomics (Jcsg),
Joint Center For Structural Genomics (Jcsg).
N/A N/A.
Page generated: Sat Jul 20 10:45:59 2024
|