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Chlorine in PDB 2qx5: Structure of Nucleoporin NIC96

Protein crystallography data

The structure of Structure of Nucleoporin NIC96, PDB code: 2qx5 was solved by S.Jeudy, T.U.Schwartz, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 2.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 87.121, 82.478, 113.028, 90.00, 91.11, 90.00
R / Rfree (%) 23.3 / 28.5

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Structure of Nucleoporin NIC96 (pdb code 2qx5). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Nucleoporin NIC96, PDB code: 2qx5:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2qx5

Go back to Chlorine Binding Sites List in 2qx5
Chlorine binding site 1 out of 2 in the Structure of Nucleoporin NIC96


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Nucleoporin NIC96 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl854

b:58.9
occ:1.00
CB A:ASN773 3.6 48.9 1.0
NE A:ARG724 3.7 45.3 1.0
CG2 A:ILE720 3.7 28.4 1.0
ND2 A:ASN773 4.0 46.9 1.0
CB A:LEU665 4.2 33.1 1.0
CG A:ARG724 4.2 34.4 1.0
O A:ASN770 4.3 39.0 1.0
CD A:ARG724 4.3 41.0 1.0
CG A:ASN773 4.4 53.9 1.0
CD2 A:LEU774 4.4 36.1 1.0
OD1 A:ASN770 4.5 42.0 1.0
O A:LEU665 4.5 52.8 1.0
CB A:ASN770 4.6 38.2 1.0
CD1 A:ILE777 4.6 42.0 1.0
N A:LEU774 4.7 35.2 1.0
C A:LEU665 4.7 47.6 1.0
CZ A:ARG724 4.7 52.5 1.0
NH2 A:ARG724 4.8 67.4 1.0
C A:ASN773 4.8 35.4 1.0
CA A:ASN773 4.8 44.7 1.0
CG A:LEU774 4.9 43.2 1.0
CA A:LEU665 4.9 43.9 1.0
CA A:ASN770 4.9 33.8 1.0
CG A:ASN770 4.9 38.2 1.0
CD2 A:LEU665 5.0 32.4 1.0
CG A:LEU665 5.0 27.5 1.0

Chlorine binding site 2 out of 2 in 2qx5

Go back to Chlorine Binding Sites List in 2qx5
Chlorine binding site 2 out of 2 in the Structure of Nucleoporin NIC96


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Nucleoporin NIC96 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl844

b:57.6
occ:1.00
CB B:ASN773 3.6 47.3 1.0
CG2 B:ILE720 3.6 36.7 1.0
NE B:ARG724 3.7 46.6 1.0
CB B:LEU665 4.0 36.8 1.0
O B:ASN770 4.2 46.4 1.0
OD1 B:ASN773 4.2 61.4 1.0
OD1 B:ASN770 4.3 45.5 1.0
CG B:ARG724 4.4 42.4 1.0
CD2 B:LEU774 4.4 42.2 1.0
CG B:ASN773 4.4 55.0 1.0
CD B:ARG724 4.5 40.2 1.0
NH2 B:ARG724 4.5 56.5 1.0
O B:LEU665 4.5 51.8 1.0
CZ B:ARG724 4.6 48.6 1.0
CB B:ASN770 4.6 40.4 1.0
C B:LEU665 4.6 50.8 1.0
N B:LEU774 4.7 42.4 1.0
CD1 B:ILE777 4.7 44.5 1.0
C B:ASN773 4.7 41.6 1.0
CA B:ASN773 4.7 46.4 1.0
CG B:LEU774 4.8 50.4 1.0
CA B:LEU665 4.8 50.3 1.0
CG B:ASN770 4.8 38.0 1.0
CA B:ASN770 4.9 30.0 1.0
CG B:LEU665 4.9 36.2 1.0
C B:ASN770 5.0 36.9 1.0

Reference:

S.Jeudy, T.U.Schwartz. Crystal Structure of Nucleoporin NIC96 Reveals A Novel, Intricate Helical Domain Architecture J.Biol.Chem. V. 282 34904 2007.
ISSN: ISSN 0021-9258
PubMed: 17897938
DOI: 10.1074/JBC.M705479200
Page generated: Sat Dec 12 09:17:56 2020

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