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Chlorine in PDB 2r85: Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp

Protein crystallography data

The structure of Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp, PDB code: 2r85 was solved by Y.Zhang, R.H.White, S.E.Ealick, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.88 / 1.70
Space group H 3 2
Cell size a, b, c (Å), α, β, γ (°) 123.205, 123.205, 376.298, 90.00, 90.00, 120.00
R / Rfree (%) 16.5 / 18.6

Other elements in 2r85:

The structure of Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp (pdb code 2r85). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp, PDB code: 2r85:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2r85

Go back to Chlorine Binding Sites List in 2r85
Chlorine binding site 1 out of 2 in the Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl601

b:19.1
occ:1.00
O A:HOH756 2.7 33.4 1.0
O A:HOH759 2.8 20.3 1.0
NE2 A:HIS11 3.0 8.8 1.0
N A:ALA290 3.1 7.6 1.0
CA A:VAL289 3.6 7.6 1.0
O A:HOH603 3.6 17.4 1.0
O A:HOH762 3.6 24.7 1.0
CB A:VAL289 3.7 7.9 1.0
C A:VAL289 3.9 7.4 1.0
CE1 A:HIS11 3.9 9.1 1.0
CB A:ALA290 3.9 7.9 1.0
CD2 A:HIS11 4.0 9.0 1.0
CG1 A:VAL289 4.0 9.2 1.0
CA A:ALA290 4.1 7.1 1.0
O A:HOH953 4.2 39.2 1.0
O A:HOH755 4.4 23.1 1.0
O A:HOH752 4.5 30.2 1.0
O A:HOH760 4.5 30.6 1.0
O A:HOH750 4.5 26.3 1.0
O A:ILE288 4.7 9.2 1.0
O A:HOH604 4.8 16.3 1.0
O A:HOH749 4.9 13.9 1.0
N A:VAL289 4.9 8.3 1.0
O A:HOH751 4.9 19.8 1.0
O A:HOH855 4.9 30.4 1.0

Chlorine binding site 2 out of 2 in 2r85

Go back to Chlorine Binding Sites List in 2r85
Chlorine binding site 2 out of 2 in the Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Purp From Pyrococcus Furiosus Complexed with Amp within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl601

b:23.2
occ:1.00
O B:HOH690 2.7 21.8 1.0
O B:HOH695 2.8 32.9 1.0
NE2 B:HIS11 3.0 12.6 1.0
N B:ALA290 3.1 10.9 1.0
O B:HOH763 3.5 29.7 1.0
O B:HOH689 3.5 22.0 1.0
CA B:VAL289 3.6 11.5 1.0
CB B:VAL289 3.7 11.8 1.0
C B:VAL289 3.9 11.4 1.0
CB B:ALA290 3.9 11.0 1.0
CE1 B:HIS11 3.9 12.5 1.0
CD2 B:HIS11 4.0 12.9 1.0
CG1 B:VAL289 4.0 12.4 1.0
O B:HOH865 4.1 42.5 1.0
CA B:ALA290 4.1 10.4 1.0
O B:HOH696 4.4 27.7 1.0
O B:HOH691 4.4 26.8 1.0
O B:HOH694 4.5 31.4 1.0
O B:HOH861 4.6 43.2 1.0
O B:ILE288 4.8 12.8 1.0
O B:HOH603 4.8 20.7 1.0
O B:HOH692 4.8 21.1 1.0
O B:HOH687 4.8 17.1 1.0
N B:VAL289 4.9 12.0 1.0

Reference:

Y.Zhang, R.H.White, S.E.Ealick. Crystal Structure and Function of 5-Formaminoimidazole-4-Carboxamide Ribonucleotide Synthetase From Methanocaldococcus Jannaschii. Biochemistry V. 47 205 2008.
ISSN: ISSN 0006-2960
PubMed: 18069798
DOI: 10.1021/BI701406G
Page generated: Sat Dec 12 09:18:22 2020

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