Atomistry » Chlorine » PDB 2rh8-2uxg » 2rir
Atomistry »
  Chlorine »
    PDB 2rh8-2uxg »
      2rir »

Chlorine in PDB 2rir: Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis

Protein crystallography data

The structure of Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis, PDB code: 2rir was solved by J.Osipiuk, P.Quartey, S.Moy, A.Joachimiak, Midwest Center For Structuralgenomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.79
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 261.578, 75.108, 200.464, 90.00, 119.74, 90.00
R / Rfree (%) 19.9 / 24.9

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis (pdb code 2rir). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 7 binding sites of Chlorine where determined in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis, PDB code: 2rir:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7;

Chlorine binding site 1 out of 7 in 2rir

Go back to Chlorine Binding Sites List in 2rir
Chlorine binding site 1 out of 7 in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:44.1
occ:1.00
N A:SER187 3.6 25.0 1.0
OG A:SER187 3.7 24.3 1.0
CB A:SER187 4.1 23.9 1.0
CA A:SER186 4.2 25.3 1.0
C A:SER186 4.4 25.4 1.0
CA A:SER187 4.5 24.3 1.0
CB A:SER186 4.7 25.4 1.0

Chlorine binding site 2 out of 7 in 2rir

Go back to Chlorine Binding Sites List in 2rir
Chlorine binding site 2 out of 7 in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl502

b:46.6
occ:1.00
N B:SER187 3.8 31.0 1.0
CB B:SER187 4.3 31.3 1.0
CA B:SER186 4.3 30.1 1.0
OG B:SER187 4.5 33.7 1.0
CB B:SER186 4.5 29.9 1.0
C B:SER186 4.6 30.4 1.0
CA B:SER187 4.7 31.1 1.0

Chlorine binding site 3 out of 7 in 2rir

Go back to Chlorine Binding Sites List in 2rir
Chlorine binding site 3 out of 7 in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Cl504

b:40.0
occ:1.00
OG D:SER187 3.3 33.7 1.0
N D:SER187 3.9 32.8 1.0
CB D:SER187 4.1 31.7 1.0
NZ A:LYS286 4.6 46.8 1.0
CA D:SER186 4.6 32.3 1.0
CA D:SER187 4.7 31.9 1.0
C D:SER186 4.8 32.7 1.0
CB D:SER186 5.0 32.4 1.0

Chlorine binding site 4 out of 7 in 2rir

Go back to Chlorine Binding Sites List in 2rir
Chlorine binding site 4 out of 7 in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Cl505

b:44.9
occ:1.00
OG E:SER187 3.7 27.4 1.0
N E:SER187 3.8 27.1 1.0
CB E:SER187 4.0 26.8 1.0
CA E:SER186 4.5 26.9 1.0
CA E:SER187 4.5 26.9 1.0
C E:SER186 4.6 26.9 1.0
NZ F:LYS286 4.7 36.6 1.0
CB E:SER186 4.9 26.9 1.0

Chlorine binding site 5 out of 7 in 2rir

Go back to Chlorine Binding Sites List in 2rir
Chlorine binding site 5 out of 7 in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl507

b:51.4
occ:1.00
N G:SER187 3.8 24.8 1.0
OG G:SER187 3.8 27.0 1.0
CA G:SER186 4.3 24.4 1.0
CB G:SER187 4.4 25.2 1.0
CB G:SER186 4.4 23.9 1.0
O H:HOH517 4.6 29.9 1.0
C G:SER186 4.6 24.7 1.0
CA G:SER187 4.7 25.1 1.0

Chlorine binding site 6 out of 7 in 2rir

Go back to Chlorine Binding Sites List in 2rir
Chlorine binding site 6 out of 7 in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl508

b:38.0
occ:1.00
N H:SER187 3.7 23.6 1.0
CB H:SER187 4.0 22.3 1.0
OG H:SER187 4.0 22.9 1.0
CA H:SER187 4.5 22.5 1.0
CA H:SER186 4.6 24.8 1.0
C H:SER186 4.7 24.5 1.0

Chlorine binding site 7 out of 7 in 2rir

Go back to Chlorine Binding Sites List in 2rir
Chlorine binding site 7 out of 7 in the Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl509

b:43.0
occ:1.00
O H:LEU63 2.9 30.1 1.0
NE2 H:GLN16 3.4 27.8 1.0
C H:LEU63 4.1 30.3 1.0
C H:PRO64 4.1 32.4 1.0
N H:VAL65 4.2 33.9 1.0
CG2 H:ILE62 4.2 26.8 1.0
CD1 H:ILE19 4.4 19.8 1.0
CA H:PRO64 4.4 31.8 1.0
CD1 H:LEU280 4.4 17.8 1.0
O H:PRO64 4.4 31.7 1.0
CD2 H:LEU280 4.5 19.2 1.0
N H:GLY102 4.5 35.3 1.0
CD1 H:LEU122 4.5 27.6 1.0
C H:SER101 4.6 34.8 1.0
CA H:VAL65 4.6 35.4 1.0
CA H:SER101 4.7 34.6 1.0
CD H:GLN16 4.7 28.6 1.0
CG2 H:VAL65 4.7 35.6 1.0
N H:PRO64 4.7 31.1 1.0
CD1 H:LEU284 4.8 19.0 1.0
CG H:LEU280 4.9 19.9 1.0
O H:PHE100 4.9 33.1 1.0

Reference:

J.Osipiuk, P.Quartey, S.Moy, A.Joachimiak. Crystal Structure of Dipicolinate Synthase, A Chain, From Bacillus Subtilis. To Be Published.
Page generated: Sat Dec 12 09:18:56 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy