Chlorine in PDB 2uxp: Ttgr in Complex Chloramphenicol
Protein crystallography data
The structure of Ttgr in Complex Chloramphenicol, PDB code: 2uxp
was solved by
Y.Alguel,
C.Meng,
W.Teran,
T.Krell,
J.L.Ramos,
M.-T.Gallegos,
X.Zhang,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
45.55 /
2.7
|
Space group
|
P 21 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
46.457,
230.673,
44.006,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23.2 /
29.6
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Ttgr in Complex Chloramphenicol
(pdb code 2uxp). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Ttgr in Complex Chloramphenicol, PDB code: 2uxp:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 2uxp
Go back to
Chlorine Binding Sites List in 2uxp
Chlorine binding site 1 out
of 4 in the Ttgr in Complex Chloramphenicol
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Ttgr in Complex Chloramphenicol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1211
b:90.3
occ:0.69
|
CL1
|
A:CLM1211
|
0.0
|
90.3
|
0.7
|
C1
|
A:CLM1211
|
1.8
|
90.7
|
0.7
|
C2
|
A:CLM1211
|
2.7
|
90.9
|
0.7
|
CL2
|
A:CLM1211
|
3.0
|
90.7
|
0.7
|
O2
|
A:CLM1211
|
3.1
|
91.0
|
0.7
|
N2
|
A:CLM1211
|
3.7
|
91.2
|
0.7
|
CB
|
A:LEU66
|
4.0
|
70.3
|
1.0
|
CD2
|
A:HIS70
|
4.0
|
77.1
|
1.0
|
O
|
A:LEU66
|
4.0
|
71.1
|
1.0
|
NE2
|
A:HIS70
|
4.2
|
77.8
|
1.0
|
ND1
|
A:HIS67
|
4.3
|
0.3
|
1.0
|
C
|
A:LEU66
|
4.4
|
71.3
|
1.0
|
CD1
|
A:LEU66
|
4.7
|
67.7
|
1.0
|
CE1
|
A:HIS67
|
4.7
|
0.3
|
1.0
|
CA
|
A:LEU66
|
4.8
|
70.5
|
1.0
|
CG1
|
A:VAL96
|
4.8
|
53.2
|
1.0
|
CG
|
A:LEU66
|
4.9
|
69.6
|
1.0
|
C3
|
A:CLM1211
|
4.9
|
90.9
|
0.7
|
|
Chlorine binding site 2 out
of 4 in 2uxp
Go back to
Chlorine Binding Sites List in 2uxp
Chlorine binding site 2 out
of 4 in the Ttgr in Complex Chloramphenicol
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Ttgr in Complex Chloramphenicol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1211
b:90.7
occ:0.69
|
CL2
|
A:CLM1211
|
0.0
|
90.7
|
0.7
|
C1
|
A:CLM1211
|
1.8
|
90.7
|
0.7
|
C2
|
A:CLM1211
|
2.7
|
90.9
|
0.7
|
CL1
|
A:CLM1211
|
3.0
|
90.3
|
0.7
|
O2
|
A:CLM1211
|
3.1
|
91.0
|
0.7
|
N2
|
A:CLM1211
|
3.6
|
91.2
|
0.7
|
CD1
|
A:LEU66
|
4.2
|
67.7
|
1.0
|
CE1
|
A:HIS67
|
4.3
|
0.3
|
1.0
|
ND1
|
A:HIS67
|
4.8
|
0.3
|
1.0
|
C3
|
A:CLM1211
|
4.9
|
90.9
|
0.7
|
ND2
|
A:ASN110
|
4.9
|
44.8
|
1.0
|
CB
|
A:LEU66
|
4.9
|
70.3
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 2uxp
Go back to
Chlorine Binding Sites List in 2uxp
Chlorine binding site 3 out
of 4 in the Ttgr in Complex Chloramphenicol
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Ttgr in Complex Chloramphenicol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1211
b:1.0
occ:0.71
|
CL1
|
B:CLM1211
|
0.0
|
1.0
|
0.7
|
C1
|
B:CLM1211
|
1.9
|
0.5
|
0.7
|
C2
|
B:CLM1211
|
2.8
|
0.1
|
0.7
|
O
|
B:HOH2057
|
2.9
|
39.3
|
1.0
|
O
|
B:HOH2056
|
3.0
|
30.1
|
1.0
|
N2
|
B:CLM1211
|
3.1
|
99.4
|
0.7
|
CL2
|
B:CLM1211
|
3.2
|
0.5
|
0.7
|
SG
|
B:CYS137
|
3.4
|
68.0
|
1.0
|
C7
|
B:CLM1211
|
3.6
|
97.4
|
0.7
|
CB
|
B:CYS137
|
3.7
|
64.1
|
1.0
|
O2
|
B:CLM1211
|
3.8
|
0.2
|
0.7
|
C8
|
B:CLM1211
|
4.1
|
96.7
|
0.7
|
C3
|
B:CLM1211
|
4.5
|
98.4
|
0.7
|
CA
|
B:CYS137
|
4.6
|
63.9
|
1.0
|
CD2
|
B:HIS67
|
4.7
|
85.5
|
1.0
|
C6
|
B:CLM1211
|
4.7
|
97.5
|
0.7
|
NE2
|
B:HIS67
|
4.7
|
85.5
|
1.0
|
C5
|
B:CLM1211
|
5.0
|
97.7
|
0.7
|
|
Chlorine binding site 4 out
of 4 in 2uxp
Go back to
Chlorine Binding Sites List in 2uxp
Chlorine binding site 4 out
of 4 in the Ttgr in Complex Chloramphenicol
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Ttgr in Complex Chloramphenicol within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1211
b:0.5
occ:0.71
|
CL2
|
B:CLM1211
|
0.0
|
0.5
|
0.7
|
C1
|
B:CLM1211
|
1.9
|
0.5
|
0.7
|
C2
|
B:CLM1211
|
2.7
|
0.1
|
0.7
|
O2
|
B:CLM1211
|
2.8
|
0.2
|
0.7
|
O
|
B:HOH2014
|
3.0
|
35.0
|
1.0
|
CL1
|
B:CLM1211
|
3.2
|
1.0
|
0.7
|
CD2
|
B:HIS67
|
3.4
|
85.5
|
1.0
|
CA
|
B:HIS67
|
3.7
|
63.3
|
1.0
|
CD2
|
B:HIS70
|
3.8
|
71.8
|
1.0
|
O
|
B:HOH2057
|
3.9
|
39.3
|
1.0
|
O
|
B:LEU66
|
3.9
|
60.3
|
1.0
|
CG
|
B:HIS67
|
4.0
|
85.5
|
1.0
|
N2
|
B:CLM1211
|
4.0
|
99.4
|
0.7
|
N
|
B:HIS67
|
4.0
|
61.5
|
1.0
|
C
|
B:LEU66
|
4.1
|
60.3
|
1.0
|
CB
|
B:HIS67
|
4.2
|
85.5
|
1.0
|
NE2
|
B:HIS67
|
4.3
|
85.5
|
1.0
|
CB
|
B:LEU66
|
4.5
|
58.6
|
1.0
|
NE2
|
B:HIS70
|
4.6
|
73.1
|
1.0
|
O
|
B:HOH2056
|
4.8
|
30.1
|
1.0
|
C
|
B:HIS67
|
4.8
|
63.5
|
1.0
|
CG
|
B:HIS70
|
4.9
|
70.5
|
1.0
|
O
|
B:HIS67
|
4.9
|
62.7
|
1.0
|
|
Reference:
Y.Alguel,
C.Meng,
W.Teran,
T.Krell,
J.L.Ramos,
M.-T.Gallegos,
X.Zhang.
Crystal Structures of Multidrug Binding Protein Ttgr in Complex with Antibiotics and Plant Antimicrobials. J.Mol.Biol. V. 369 829 2007.
ISSN: ISSN 0022-2836
PubMed: 17466326
DOI: 10.1016/J.JMB.2007.03.062
Page generated: Sat Jul 20 11:28:40 2024
|