Chlorine in PDB 2v19: Crystal Structure of the T. Thermophilus Dodecin R45A Mutant

The structure of Crystal Structure of the T. Thermophilus Dodecin R45A Mutant, PDB code: 2v19 was solved by B.Meissner, L.-O.Essen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.00 / 2.59
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	67.294, 68.494, 229.891, 90.00, 90.00, 90.00
R / Rfree (%)	20.6 / 23.4

The binding sites of Chlorine atom in the Crystal Structure of the T. Thermophilus Dodecin R45A Mutant (pdb code 2v19). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the Crystal Structure of the T. Thermophilus Dodecin R45A Mutant, PDB code: 2v19:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5;

Chlorine binding site 1 out of 5 in the Crystal Structure of the T. Thermophilus Dodecin R45A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the T. Thermophilus Dodecin R45A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1070 b:33.9 occ:1.00 NZ E:LYS6 3.0 31.8 1.0 NZ A:LYS6 3.1 32.1 1.0 NZ I:LYS6 3.2 31.5 1.0 CE A:LYS6 3.8 32.0 1.0 CE E:LYS6 3.8 30.3 1.0 CE I:LYS6 3.9 31.4 1.0 CG1 A:VAL8 4.4 31.6 1.0 C7P I:COA201 4.5 52.0 1.0 CG1 I:VAL8 4.6 31.4 1.0 CG1 E:VAL8 4.6 31.6 1.0 C7P E:COA201 4.6 52.4 1.0 C7P A:COA201 4.6 52.2 1.0 O9P I:COA201 4.7 49.1 1.0 O9P A:COA201 4.9 49.0 1.0 O I:HOH2002 4.9 28.2 1.0 O9P E:COA201 5.0 49.4 1.0

Chlorine binding site 2 out of 5 in the Crystal Structure of the T. Thermophilus Dodecin R45A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the T. Thermophilus Dodecin R45A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1070 b:36.2 occ:1.00 NZ B:LYS6 3.0 32.3 1.0 NZ J:LYS6 3.0 31.6 1.0 NZ F:LYS6 3.1 31.9 1.0 CE B:LYS6 3.7 31.5 1.0 CE J:LYS6 3.7 30.9 1.0 CE F:LYS6 3.9 30.7 1.0 O F:HOH2001 4.2 20.3 1.0 CG1 B:VAL8 4.3 31.8 1.0 O J:HOH2001 4.4 35.5 1.0 CG1 J:VAL8 4.5 31.5 1.0 O B:HOH2001 4.5 20.4 1.0 C7P F:COA201 4.6 52.7 1.0 C7P B:COA201 4.6 51.7 1.0 CG1 F:VAL8 4.6 31.3 1.0 C7P J:COA201 4.6 52.5 1.0 O9P J:COA201 4.8 50.4 1.0 O9P B:COA201 4.8 48.6 1.0 O9P F:COA201 5.0 50.3 1.0 O5P F:COA201 5.0 51.1 1.0

Chlorine binding site 3 out of 5 in the Crystal Structure of the T. Thermophilus Dodecin R45A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Crystal Structure of the T. Thermophilus Dodecin R45A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1070 b:39.9 occ:1.00 NZ K:LYS6 3.0 32.3 1.0 NZ C:LYS6 3.1 31.4 1.0 NZ G:LYS6 3.2 32.7 1.0 CE C:LYS6 3.8 31.3 1.0 CE K:LYS6 3.8 31.4 1.0 CE G:LYS6 3.8 31.4 1.0 CG1 K:VAL8 4.4 31.0 1.0 CG1 G:VAL8 4.4 30.9 1.0 O K:HOH2002 4.4 32.9 1.0 CG1 C:VAL8 4.5 31.6 1.0 O G:HOH2001 4.5 19.5 1.0 C7P G:COA201 4.6 52.4 1.0 C7P C:COA201 4.6 52.2 1.0 C7P K:COA201 4.7 52.9 1.0 O9P G:COA201 4.7 49.5 1.0 O9P K:COA201 4.8 50.4 1.0

Chlorine binding site 4 out of 5 in the Crystal Structure of the T. Thermophilus Dodecin R45A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Crystal Structure of the T. Thermophilus Dodecin R45A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl1070 b:40.6 occ:1.00 NZ L:LYS6 3.1 31.5 1.0 NZ D:LYS6 3.1 31.8 1.0 NZ H:LYS6 3.2 32.1 1.0 CE D:LYS6 3.8 31.5 1.0 CE L:LYS6 3.8 31.3 1.0 CE H:LYS6 3.8 31.0 1.0 O D:HOH2001 4.1 26.9 1.0 CG1 H:VAL8 4.3 30.8 1.0 CG1 D:VAL8 4.4 31.5 1.0 CG1 L:VAL8 4.5 31.4 1.0 C7P D:COA201 4.5 52.1 1.0 C7P L:COA201 4.6 52.5 1.0 C7P H:COA201 4.6 52.4 1.0 O9P H:COA201 4.8 50.0 1.0 O9P D:COA201 4.9 48.9 1.0 O9P L:COA201 5.0 50.5 1.0

Chlorine binding site 5 out of 5 in the Crystal Structure of the T. Thermophilus Dodecin R45A Mutant


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Crystal Structure of the T. Thermophilus Dodecin R45A Mutant within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl1070 b:49.9 occ:1.00 CE1 F:HIS35 3.5 38.7 1.0 NH2 F:ARG65 3.7 47.9 1.0 ND1 F:HIS35 4.3 39.9 1.0 NE2 F:HIS35 4.3 36.0 1.0 CZ F:ARG65 4.8 49.0 1.0

B.Meissner, E.Schleicher, S.Weber, L.-O.Essen. The Dodecin From Thermus Thermophilus, A Bifunctional Cofactor Storage Protein. J.Biol.Chem. V. 282 33142 2007.
ISSN: ISSN 0021-9258
PubMed: 17855371
DOI: 10.1074/JBC.M704951200