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Chlorine in PDB 2v58: Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1

Enzymatic activity of Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1

All present enzymatic activity of Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1:
6.3.4.14;

Protein crystallography data

The structure of Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1, PDB code: 2v58 was solved by I.Mochalkin, J.R.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.32 / 2.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.211, 106.609, 122.344, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.9

Other elements in 2v58:

The structure of Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1 also contains other interesting chemical elements:

Bromine (Br) 4 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1 (pdb code 2v58). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1, PDB code: 2v58:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2v58

Go back to Chlorine Binding Sites List in 2v58
Chlorine binding site 1 out of 2 in the Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1449

b:19.5
occ:1.00
O A:HOH2103 3.1 28.8 1.0
O A:HOH2216 3.2 18.0 1.0
NE A:ARG292 3.3 23.0 1.0
N A:VAL295 3.4 20.4 1.0
NH2 A:ARG292 3.4 23.6 1.0
NE2 A:GLN294 3.6 22.6 1.0
CG A:GLN294 3.6 21.5 1.0
CB A:GLN294 3.6 21.1 1.0
CA A:GLN294 3.7 21.0 1.0
CG2 A:VAL295 3.7 20.1 1.0
CZ A:ARG292 3.8 23.5 1.0
O A:HOH2214 3.9 38.7 1.0
CB A:TYR82 4.0 19.2 1.0
C A:GLN294 4.1 20.7 1.0
CD A:GLN294 4.1 22.4 1.0
CG A:TYR82 4.2 19.1 1.0
CB A:VAL295 4.3 20.2 1.0
CD A:ARG292 4.4 22.9 1.0
CA A:VAL295 4.4 20.1 1.0
OE2 A:GLU296 4.5 20.3 1.0
CD2 A:TYR82 4.6 19.0 1.0
O A:HOH2240 4.7 37.4 1.0
CD1 A:TYR82 4.7 19.4 1.0
O A:ILE293 4.8 21.7 1.0
N A:GLN294 4.9 21.2 1.0
CG A:ARG292 5.0 22.7 1.0

Chlorine binding site 2 out of 2 in 2v58

Go back to Chlorine Binding Sites List in 2v58
Chlorine binding site 2 out of 2 in the Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Biotin Carboxylase From E.Coli in Complex with Potent Inhibitor 1 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1448

b:25.9
occ:1.00
NH1 B:ARG292 2.7 29.3 1.0
O B:HOH2138 3.1 31.5 1.0
N B:VAL295 3.3 21.3 1.0
O B:HOH2137 3.5 40.0 1.0
CZ B:ARG292 3.5 28.3 1.0
CG2 B:VAL295 3.6 20.7 1.0
CA B:GLN294 3.6 22.3 1.0
NH2 B:ARG292 3.7 28.2 1.0
CB B:GLN294 3.8 22.4 1.0
CG B:GLN294 4.0 23.5 1.0
C B:GLN294 4.0 21.7 1.0
CB B:VAL295 4.1 21.0 1.0
CB B:TYR82 4.1 21.8 1.0
CG B:TYR82 4.2 22.0 1.0
CA B:VAL295 4.3 20.9 1.0
OE2 B:GLU296 4.4 21.7 1.0
O B:HOH2163 4.4 39.0 1.0
OE1 B:GLN294 4.6 26.7 1.0
O B:ILE293 4.6 22.4 1.0
CD2 B:TYR82 4.6 22.0 1.0
CD1 B:TYR82 4.6 22.4 1.0
CD B:GLN294 4.7 25.0 1.0
NE B:ARG292 4.7 27.9 1.0
N B:GLN294 4.9 22.3 1.0

Reference:

J.R.Miller, S.Dunham, I.Mochalkin, C.Banotai, M.Bowman, S.Buist, B.Dunkle, D.Hanna, H.J.Harwood, M.D.Huband, A.Karnovsky, M.Kuhn, C.Limberakis, J.Y.Liu, S.Mehrens, W.T.Mueller, L.Narasimhan, A.Ogden, J.Ohren, J.V.Prasad, J.A.Shelly, L.Skerlos, M.Sulavik, V.H.Thomas, S.Vanderroest, L.Wang, Z.Wang, A.Whitton, T.Zhu, C.K.Stover. A Class of Selective Antibacterials Derived From A Protein Kinase Inhibitor Pharmacophore. Proc.Natl.Acad.Sci.Usa V. 106 1737 2009.
ISSN: ISSN 0027-8424
PubMed: 19164768
DOI: 10.1073/PNAS.0811275106
Page generated: Sat Jul 20 11:37:01 2024

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