Atomistry » Chlorine » PDB 2uxn-2v6g » 2v5h
Atomistry »
  Chlorine »
    PDB 2uxn-2v6g »
      2v5h »

Chlorine in PDB 2v5h: Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942

Enzymatic activity of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942

All present enzymatic activity of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942:
2.7.2.8;

Protein crystallography data

The structure of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942, PDB code: 2v5h was solved by J.L.Llacer, C.Marco-Marin, F.Gil-Ortiz, I.Fita, V.Rubio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 90.379, 161.027, 91.562, 90.00, 106.53, 90.00
R / Rfree (%) 20 / 23.6

Other elements in 2v5h:

The structure of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 (pdb code 2v5h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942, PDB code: 2v5h:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 1 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl1112

b:43.3
occ:1.00
 NE2 G:GLN39 3.1 53.6 1.0
N G:GLY87 3.1 37.3 1.0
CD I:ARG103 3.5 31.6 1.0
CG I:ARG103 3.5 32.1 1.0
N G:ASP88 3.7 37.0 1.0
NH1 I:ARG101 3.7 42.3 1.0
CA G:ILE86 3.8 36.7 1.0
C G:ILE86 3.9 37.1 1.0
CA G:GLY87 4.0 37.2 1.0
NH2 I:ARG101 4.1 41.2 1.0
C G:GLY87 4.2 37.2 1.0
CD G:GLN39 4.3 53.9 1.0
CZ I:ARG101 4.4 42.5 1.0
O G:GLU85 4.4 37.0 1.0
N G:GLY89 4.4 36.6 1.0
NH1 I:ARG103 4.4 32.2 1.0
CG2 G:ILE86 4.4 36.0 1.0
CB G:ILE86 4.5 36.7 1.0
CB G:ASP88 4.5 36.9 1.0
CA G:ASP88 4.6 36.8 1.0
CG1 G:ILE86 4.6 36.4 1.0
CB I:ARG103 4.6 31.7 1.0
NE I:ARG103 4.7 32.9 1.0
N G:ILE86 4.8 36.6 1.0
OE1 G:GLN39 5.0 52.8 1.0

Chlorine binding site 2 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 2 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl1109

b:35.2
occ:1.00
 O H:HOH2011 3.0 39.5 1.0
N H:GLY87 3.1 37.3 1.0
CD G:ARG103 3.3 31.5 1.0
CG G:ARG103 3.5 32.1 1.0
CA H:ILE86 3.6 36.7 1.0
N H:ASP88 3.7 36.9 1.0
C H:ILE86 3.9 37.3 1.0
CA H:GLY87 4.0 37.3 1.0
NH1 G:ARG101 4.1 44.9 1.0
CG2 H:ILE86 4.2 35.9 1.0
CB H:ILE86 4.3 36.6 1.0
NH1 G:ARG103 4.3 31.9 1.0
C H:GLY87 4.3 37.4 1.0
CG1 H:ILE86 4.4 36.3 1.0
O H:GLU85 4.4 37.0 1.0
CB G:ARG103 4.5 31.7 1.0
NE G:ARG103 4.6 32.9 1.0
CB H:ASP88 4.6 36.9 1.0
N H:GLY89 4.6 36.7 1.0
CA H:ASP88 4.7 36.8 1.0
N H:ILE86 4.7 36.6 1.0
CZ G:ARG103 5.0 32.6 1.0
C H:GLU85 5.0 36.7 1.0

Chlorine binding site 3 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 3 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl1110

b:63.7
occ:1.00
 N I:GLY87 3.0 37.4 1.0
O I:HOH2008 3.1 26.4 1.0
CD H:ARG103 3.2 31.6 1.0
CG H:ARG103 3.3 32.1 1.0
NH2 H:ARG101 3.3 44.2 1.0
N I:ASP88 3.6 37.0 1.0
CA I:ILE86 3.6 36.8 1.0
CZ H:ARG101 3.8 43.2 1.0
C I:ILE86 3.8 37.2 1.0
CA I:GLY87 3.9 37.3 1.0
NE H:ARG101 4.0 41.1 1.0
C I:GLY87 4.2 37.2 1.0
CG2 I:ILE86 4.3 35.9 1.0
CB H:ARG103 4.3 31.6 1.0
O I:GLU85 4.3 36.9 1.0
CB I:ILE86 4.4 36.6 1.0
CG1 I:ILE86 4.5 36.4 1.0
N I:GLY89 4.5 36.7 1.0
NH1 H:ARG103 4.5 32.1 1.0
CB I:ASP88 4.5 36.9 1.0
NE H:ARG103 4.5 33.0 1.0
CA I:ASP88 4.6 36.9 1.0
NH1 H:ARG101 4.6 43.8 1.0
N I:ILE86 4.7 36.8 1.0
C I:GLU85 4.9 36.7 1.0
CD H:ARG101 5.0 37.9 1.0
O I:GLY37 5.0 49.6 1.0

Chlorine binding site 4 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 4 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl1111

b:30.4
occ:1.00
 N K:GLY87 3.2 37.4 1.0
CD J:ARG103 3.3 31.6 1.0
CG J:ARG103 3.5 32.1 1.0
CA K:ILE86 3.6 36.6 1.0
C K:ILE86 3.9 37.2 1.0
NH2 J:ARG101 4.0 46.7 1.0
N K:ASP88 4.0 36.9 1.0
CZ J:ARG101 4.1 46.3 1.0
NH1 J:ARG101 4.1 46.4 1.0
CG2 K:ILE86 4.2 36.0 1.0
NH1 J:ARG103 4.2 32.1 1.0
CA K:GLY87 4.2 37.2 1.0
CB K:ILE86 4.2 36.6 1.0
CG1 K:ILE86 4.2 36.4 1.0
NE J:ARG103 4.5 33.0 1.0
O K:GLU85 4.5 37.0 1.0
C K:GLY87 4.6 37.1 1.0
N K:ILE86 4.7 36.5 1.0
CB J:ARG103 4.7 31.6 1.0
NE J:ARG101 4.8 43.9 1.0
CZ J:ARG103 4.8 32.7 1.0
CB K:ASP88 4.9 36.8 1.0
N K:GLY89 4.9 36.6 1.0
CA K:ASP88 5.0 36.9 1.0

Chlorine binding site 5 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 5 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl1112

b:62.3
occ:1.00
 O L:HOH2014 3.1 33.4 1.0
N J:GLY87 3.3 37.4 1.0
CD L:ARG103 3.4 31.5 1.0
CG L:ARG103 3.6 32.0 1.0
CA J:ILE86 3.7 36.7 1.0
C J:ILE86 4.0 37.3 1.0
CG2 J:ILE86 4.1 36.0 1.0
NH1 L:ARG103 4.2 32.1 1.0
N J:ASP88 4.2 37.0 1.0
CG1 J:ILE86 4.2 36.4 1.0
CB J:ILE86 4.2 36.7 1.0
CA J:GLY87 4.4 37.2 1.0
CD L:ARG101 4.6 39.9 1.0
NE L:ARG103 4.6 33.0 1.0
O J:GLU85 4.6 36.9 1.0
C J:GLY87 4.7 37.2 1.0
N J:ILE86 4.7 36.6 1.0
CB L:ARG103 4.7 31.7 1.0
NE L:ARG101 4.8 44.9 1.0
CZ L:ARG103 4.9 32.6 1.0

Chlorine binding site 6 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 6 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cl1109

b:39.7
occ:1.00
 CD K:ARG103 3.0 31.7 1.0
CG K:ARG103 3.0 32.1 1.0
O L:HOH2010 3.1 16.4 1.0
N L:GLY87 3.2 37.3 1.0
NH1 K:ARG101 3.4 45.3 1.0
O L:HOH2011 3.5 22.4 1.0
N L:ASP88 3.7 37.0 1.0
CA L:ILE86 3.7 36.8 1.0
C L:ILE86 4.0 37.2 1.0
NH1 K:ARG103 4.0 32.0 1.0
CB K:ARG103 4.1 31.6 1.0
O L:GLU85 4.2 36.8 1.0
CA L:GLY87 4.2 37.3 1.0
NE K:ARG103 4.2 33.0 1.0
C L:GLY87 4.4 37.2 1.0
CB L:ASP88 4.4 36.9 1.0
CA L:ASP88 4.5 36.9 1.0
N L:GLY89 4.5 36.8 1.0
CB L:ILE86 4.5 36.6 1.0
CZ K:ARG103 4.6 32.7 1.0
CG2 L:ILE86 4.6 35.9 1.0
CG1 L:ILE86 4.6 36.4 1.0
CZ K:ARG101 4.6 44.3 1.0
N L:ILE86 4.7 36.7 1.0
C L:GLU85 4.8 36.7 1.0
N K:ARG103 4.9 31.2 1.0

Reference:

J.L.Llacer, A.Contreras, K.Forchhammer, C.Marco-Marin, F.Gil-Ortiz, R.Maldonado, I.Fita, V.Rubio. The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen As Arginine. Proc.Natl.Acad.Sci.Usa V. 104 17644 2007.
ISSN: ISSN 0027-8424
PubMed: 17959776
DOI: 10.1073/PNAS.0705987104
Page generated: Sat Jul 20 11:38:00 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy