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Chlorine in PDB 2v5h: Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942

Enzymatic activity of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942

All present enzymatic activity of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942:
2.7.2.8;

Protein crystallography data

The structure of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942, PDB code: 2v5h was solved by J.L.Llacer, C.Marco-Marin, F.Gil-Ortiz, I.Fita, V.Rubio, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 2.75
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 90.379, 161.027, 91.562, 90.00, 106.53, 90.00
R / Rfree (%) 20 / 23.6

Other elements in 2v5h:

The structure of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 also contains other interesting chemical elements:

Sodium (Na) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 (pdb code 2v5h). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942, PDB code: 2v5h:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6;

Chlorine binding site 1 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 1 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
G:Cl1112

b:43.3
occ:1.00
NE2 G:GLN39 3.1 53.6 1.0
N G:GLY87 3.1 37.3 1.0
CD I:ARG103 3.5 31.6 1.0
CG I:ARG103 3.5 32.1 1.0
N G:ASP88 3.7 37.0 1.0
NH1 I:ARG101 3.7 42.3 1.0
CA G:ILE86 3.8 36.7 1.0
C G:ILE86 3.9 37.1 1.0
CA G:GLY87 4.0 37.2 1.0
NH2 I:ARG101 4.1 41.2 1.0
C G:GLY87 4.2 37.2 1.0
CD G:GLN39 4.3 53.9 1.0
CZ I:ARG101 4.4 42.5 1.0
O G:GLU85 4.4 37.0 1.0
N G:GLY89 4.4 36.6 1.0
NH1 I:ARG103 4.4 32.2 1.0
CG2 G:ILE86 4.4 36.0 1.0
CB G:ILE86 4.5 36.7 1.0
CB G:ASP88 4.5 36.9 1.0
CA G:ASP88 4.6 36.8 1.0
CG1 G:ILE86 4.6 36.4 1.0
CB I:ARG103 4.6 31.7 1.0
NE I:ARG103 4.7 32.9 1.0
N G:ILE86 4.8 36.6 1.0
OE1 G:GLN39 5.0 52.8 1.0

Chlorine binding site 2 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 2 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl1109

b:35.2
occ:1.00
O H:HOH2011 3.0 39.5 1.0
N H:GLY87 3.1 37.3 1.0
CD G:ARG103 3.3 31.5 1.0
CG G:ARG103 3.5 32.1 1.0
CA H:ILE86 3.6 36.7 1.0
N H:ASP88 3.7 36.9 1.0
C H:ILE86 3.9 37.3 1.0
CA H:GLY87 4.0 37.3 1.0
NH1 G:ARG101 4.1 44.9 1.0
CG2 H:ILE86 4.2 35.9 1.0
CB H:ILE86 4.3 36.6 1.0
NH1 G:ARG103 4.3 31.9 1.0
C H:GLY87 4.3 37.4 1.0
CG1 H:ILE86 4.4 36.3 1.0
O H:GLU85 4.4 37.0 1.0
CB G:ARG103 4.5 31.7 1.0
NE G:ARG103 4.6 32.9 1.0
CB H:ASP88 4.6 36.9 1.0
N H:GLY89 4.6 36.7 1.0
CA H:ASP88 4.7 36.8 1.0
N H:ILE86 4.7 36.6 1.0
CZ G:ARG103 5.0 32.6 1.0
C H:GLU85 5.0 36.7 1.0

Chlorine binding site 3 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 3 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
H:Cl1110

b:63.7
occ:1.00
N I:GLY87 3.0 37.4 1.0
O I:HOH2008 3.1 26.4 1.0
CD H:ARG103 3.2 31.6 1.0
CG H:ARG103 3.3 32.1 1.0
NH2 H:ARG101 3.3 44.2 1.0
N I:ASP88 3.6 37.0 1.0
CA I:ILE86 3.6 36.8 1.0
CZ H:ARG101 3.8 43.2 1.0
C I:ILE86 3.8 37.2 1.0
CA I:GLY87 3.9 37.3 1.0
NE H:ARG101 4.0 41.1 1.0
C I:GLY87 4.2 37.2 1.0
CG2 I:ILE86 4.3 35.9 1.0
CB H:ARG103 4.3 31.6 1.0
O I:GLU85 4.3 36.9 1.0
CB I:ILE86 4.4 36.6 1.0
CG1 I:ILE86 4.5 36.4 1.0
N I:GLY89 4.5 36.7 1.0
NH1 H:ARG103 4.5 32.1 1.0
CB I:ASP88 4.5 36.9 1.0
NE H:ARG103 4.5 33.0 1.0
CA I:ASP88 4.6 36.9 1.0
NH1 H:ARG101 4.6 43.8 1.0
N I:ILE86 4.7 36.8 1.0
C I:GLU85 4.9 36.7 1.0
CD H:ARG101 5.0 37.9 1.0
O I:GLY37 5.0 49.6 1.0

Chlorine binding site 4 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 4 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl1111

b:30.4
occ:1.00
N K:GLY87 3.2 37.4 1.0
CD J:ARG103 3.3 31.6 1.0
CG J:ARG103 3.5 32.1 1.0
CA K:ILE86 3.6 36.6 1.0
C K:ILE86 3.9 37.2 1.0
NH2 J:ARG101 4.0 46.7 1.0
N K:ASP88 4.0 36.9 1.0
CZ J:ARG101 4.1 46.3 1.0
NH1 J:ARG101 4.1 46.4 1.0
CG2 K:ILE86 4.2 36.0 1.0
NH1 J:ARG103 4.2 32.1 1.0
CA K:GLY87 4.2 37.2 1.0
CB K:ILE86 4.2 36.6 1.0
CG1 K:ILE86 4.2 36.4 1.0
NE J:ARG103 4.5 33.0 1.0
O K:GLU85 4.5 37.0 1.0
C K:GLY87 4.6 37.1 1.0
N K:ILE86 4.7 36.5 1.0
CB J:ARG103 4.7 31.6 1.0
NE J:ARG101 4.8 43.9 1.0
CZ J:ARG103 4.8 32.7 1.0
CB K:ASP88 4.9 36.8 1.0
N K:GLY89 4.9 36.6 1.0
CA K:ASP88 5.0 36.9 1.0

Chlorine binding site 5 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 5 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
J:Cl1112

b:62.3
occ:1.00
O L:HOH2014 3.1 33.4 1.0
N J:GLY87 3.3 37.4 1.0
CD L:ARG103 3.4 31.5 1.0
CG L:ARG103 3.6 32.0 1.0
CA J:ILE86 3.7 36.7 1.0
C J:ILE86 4.0 37.3 1.0
CG2 J:ILE86 4.1 36.0 1.0
NH1 L:ARG103 4.2 32.1 1.0
N J:ASP88 4.2 37.0 1.0
CG1 J:ILE86 4.2 36.4 1.0
CB J:ILE86 4.2 36.7 1.0
CA J:GLY87 4.4 37.2 1.0
CD L:ARG101 4.6 39.9 1.0
NE L:ARG103 4.6 33.0 1.0
O J:GLU85 4.6 36.9 1.0
C J:GLY87 4.7 37.2 1.0
N J:ILE86 4.7 36.6 1.0
CB L:ARG103 4.7 31.7 1.0
NE L:ARG101 4.8 44.9 1.0
CZ L:ARG103 4.9 32.6 1.0

Chlorine binding site 6 out of 6 in 2v5h

Go back to Chlorine Binding Sites List in 2v5h
Chlorine binding site 6 out of 6 in the Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Controlling the Storage of Nitrogen As Arginine: the Complex of Pii and Acetylglutamate Kinase From Synechococcus Elongatus Pcc 7942 within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Cl1109

b:39.7
occ:1.00
CD K:ARG103 3.0 31.7 1.0
CG K:ARG103 3.0 32.1 1.0
O L:HOH2010 3.1 16.4 1.0
N L:GLY87 3.2 37.3 1.0
NH1 K:ARG101 3.4 45.3 1.0
O L:HOH2011 3.5 22.4 1.0
N L:ASP88 3.7 37.0 1.0
CA L:ILE86 3.7 36.8 1.0
C L:ILE86 4.0 37.2 1.0
NH1 K:ARG103 4.0 32.0 1.0
CB K:ARG103 4.1 31.6 1.0
O L:GLU85 4.2 36.8 1.0
CA L:GLY87 4.2 37.3 1.0
NE K:ARG103 4.2 33.0 1.0
C L:GLY87 4.4 37.2 1.0
CB L:ASP88 4.4 36.9 1.0
CA L:ASP88 4.5 36.9 1.0
N L:GLY89 4.5 36.8 1.0
CB L:ILE86 4.5 36.6 1.0
CZ K:ARG103 4.6 32.7 1.0
CG2 L:ILE86 4.6 35.9 1.0
CG1 L:ILE86 4.6 36.4 1.0
CZ K:ARG101 4.6 44.3 1.0
N L:ILE86 4.7 36.7 1.0
C L:GLU85 4.8 36.7 1.0
N K:ARG103 4.9 31.2 1.0

Reference:

J.L.Llacer, A.Contreras, K.Forchhammer, C.Marco-Marin, F.Gil-Ortiz, R.Maldonado, I.Fita, V.Rubio. The Crystal Structure of the Complex of Pii and Acetylglutamate Kinase Reveals How Pii Controls the Storage of Nitrogen As Arginine. Proc.Natl.Acad.Sci.Usa V. 104 17644 2007.
ISSN: ISSN 0027-8424
PubMed: 17959776
DOI: 10.1073/PNAS.0705987104
Page generated: Sat Dec 12 09:19:50 2020

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