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Chlorine in PDB 2v7m: Prnb 7-Cl-D-Tryptophan Complex

Protein crystallography data

The structure of Prnb 7-Cl-D-Tryptophan Complex, PDB code: 2v7m was solved by J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 48.39 / 2.0
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 68.517, 79.547, 93.162, 90.00, 103.63, 90.00
R / Rfree (%) 17.1 / 19.9

Other elements in 2v7m:

The structure of Prnb 7-Cl-D-Tryptophan Complex also contains other interesting chemical elements:

Iron (Fe) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Prnb 7-Cl-D-Tryptophan Complex (pdb code 2v7m). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Prnb 7-Cl-D-Tryptophan Complex, PDB code: 2v7m:

Chlorine binding site 1 out of 1 in 2v7m

Go back to Chlorine Binding Sites List in 2v7m
Chlorine binding site 1 out of 1 in the Prnb 7-Cl-D-Tryptophan Complex


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Prnb 7-Cl-D-Tryptophan Complex within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1360

b:24.4
occ:1.00
CL A:DTE1360 0.0 24.4 1.0
CZ2 A:DTE1360 1.7 23.4 1.0
CE2 A:DTE1360 2.7 23.6 1.0
CH2 A:DTE1360 2.7 23.3 1.0
NE1 A:DTE1360 3.1 22.8 1.0
O A:HOH2140 3.8 16.6 1.0
CG2 A:VAL117 3.8 22.9 1.0
CD2 A:DTE1360 4.0 23.1 1.0
CZ3 A:DTE1360 4.0 23.4 1.0
CD1 A:LEU114 4.1 21.5 1.0
CE2 A:TYR209 4.2 26.3 1.0
OH A:TYR209 4.3 27.4 1.0
CZ A:TYR209 4.3 26.3 1.0
CD2 A:LEU140 4.3 22.6 1.0
O A:PRO222 4.4 25.4 1.0
CB A:PRO222 4.4 24.7 1.0
C A:PRO222 4.4 25.0 1.0
CD1 A:DTE1360 4.4 23.3 1.0
CD2 A:LEU141 4.5 25.8 1.0
CE3 A:DTE1360 4.5 23.3 1.0
N A:GLY223 4.5 25.0 1.0
CA A:GLY223 4.6 24.4 1.0
CG A:PRO222 4.8 25.2 1.0
CG A:LEU140 4.8 23.6 1.0
CG A:DTE1360 4.9 23.5 1.0
CD2 A:TYR209 4.9 26.2 1.0
CG2 A:THR118 4.9 20.7 1.0

Reference:

W.De Laurentis, L.Khim, J.L.R.Anderson, A.Adam, R.S.Phillips, S.K.Chapman, K.-H.Van Pee, J.H.Naismith. The Second Enzyme in Pyrrolnitrin Biosynthetic Pathway Is Related to the Heme-Dependent Dioxygenase Superfamily Biochemistry V. 46 12393 2007.
ISSN: ISSN 0006-2960
PubMed: 17924666
DOI: 10.1021/BI7012189
Page generated: Sat Jul 20 11:39:40 2024

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