Atomistry » Chlorine » PDB 2v79-2vfv » 2v7u
Atomistry »
  Chlorine »
    PDB 2v79-2vfv »
      2v7u »

Chlorine in PDB 2v7u: X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion

Enzymatic activity of X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion

All present enzymatic activity of X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion:
2.5.1.63;

Protein crystallography data

The structure of X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion, PDB code: 2v7u was solved by X.Zhu, D.O'hagan, J.H.Naismith, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.70 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 76.224, 129.377, 183.080, 90.00, 90.00, 90.00
R / Rfree (%) 16.4 / 20.4

Chlorine Binding Sites:

The binding sites of Chlorine atom in the X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion (pdb code 2v7u). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion, PDB code: 2v7u:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2v7u

Go back to Chlorine Binding Sites List in 2v7u
Chlorine binding site 1 out of 3 in the X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1300

b:31.8
occ:1.00
O A:HOH2064 2.9 19.3 1.0
N A:GLY158 3.0 16.9 1.0
CA A:GLY158 3.1 16.8 1.0
O3' B:SAM1299 3.2 26.3 1.0
C5' B:SAM1299 3.2 28.3 1.0
CD1 A:PHE156 3.3 20.1 1.0
C4' B:SAM1299 3.4 24.0 1.0
C3' B:SAM1299 3.4 22.3 1.0
CE1 A:PHE156 3.6 19.7 1.0
CD2 A:LEU17 3.6 17.6 1.0
N A:ARG159 4.0 16.9 1.0
C A:GLY158 4.0 16.7 1.0
C A:PHE156 4.1 18.0 1.0
N A:TYR157 4.3 17.6 1.0
C A:TYR157 4.3 17.1 1.0
CA A:PHE156 4.3 18.1 1.0
O A:PHE156 4.4 17.6 1.0
CG A:PHE156 4.5 18.6 1.0
CG A:LEU17 4.5 19.0 1.0
SD B:SAM1299 4.6 30.7 1.0
CG B:SAM1299 4.6 25.9 1.0
OG1 A:THR75 4.6 20.4 1.0
CD1 A:LEU17 4.7 18.4 1.0
CB A:TYR77 4.8 16.4 1.0
O4' B:SAM1299 4.8 19.9 1.0
CA A:TYR157 4.9 17.4 1.0
CZ A:PHE156 4.9 18.4 1.0
OD1 A:ASP16 4.9 21.3 1.0
C2' B:SAM1299 5.0 20.6 1.0

Chlorine binding site 2 out of 3 in 2v7u

Go back to Chlorine Binding Sites List in 2v7u
Chlorine binding site 2 out of 3 in the X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1301

b:33.3
occ:1.00
O B:HOH2078 2.9 21.1 1.0
N B:GLY158 3.0 16.7 1.0
CA B:GLY158 3.1 16.7 1.0
O3' B:SAM1300 3.2 20.7 1.0
CD1 B:PHE156 3.4 20.6 1.0
C5' B:SAM1300 3.4 24.4 1.0
C3' B:SAM1300 3.4 21.1 1.0
C4' B:SAM1300 3.5 22.7 1.0
CE1 B:PHE156 3.6 21.1 1.0
CD2 B:LEU17 3.7 19.2 1.0
N B:ARG159 3.9 17.0 1.0
C B:GLY158 3.9 16.6 1.0
C B:PHE156 4.2 17.8 1.0
C B:TYR157 4.3 16.8 1.0
N B:TYR157 4.4 17.4 1.0
CA B:PHE156 4.5 18.2 1.0
CG B:LEU17 4.5 18.0 1.0
OG1 B:THR75 4.5 19.1 1.0
O B:PHE156 4.5 17.3 1.0
CG B:PHE156 4.6 20.0 1.0
SD B:SAM1300 4.7 27.0 1.0
CD1 B:LEU17 4.7 17.7 1.0
CG B:SAM1300 4.7 23.8 1.0
CB B:TYR77 4.7 17.0 1.0
OD1 B:ASP16 4.8 22.9 1.0
CZ B:PHE156 4.9 20.1 1.0
CA B:TYR157 4.9 17.2 1.0
O4' B:SAM1300 4.9 21.7 1.0
CG2 B:THR75 4.9 18.7 1.0
C2' B:SAM1300 4.9 20.9 1.0
O B:GLY158 5.0 17.1 1.0

Chlorine binding site 3 out of 3 in 2v7u

Go back to Chlorine Binding Sites List in 2v7u
Chlorine binding site 3 out of 3 in the X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of X-Ray Crystal Structure of 5'-Fluorodeoxyadenosine Synthase S158G Mutant Complexed with S-Adenosylmethionine and Chloride Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1299

b:36.3
occ:1.00
O C:HOH2083 3.0 24.0 1.0
N C:GLY158 3.1 16.4 1.0
O3' A:SAM1299 3.2 27.2 1.0
C5' A:SAM1299 3.2 27.4 1.0
CA C:GLY158 3.2 16.8 1.0
C4' A:SAM1299 3.3 26.0 1.0
CD1 C:PHE156 3.4 19.5 1.0
C3' A:SAM1299 3.4 25.6 1.0
CE1 C:PHE156 3.6 21.0 1.0
CD2 C:LEU17 3.7 19.9 1.0
N C:ARG159 4.0 16.9 1.0
C C:GLY158 4.1 16.5 1.0
C C:PHE156 4.2 17.6 1.0
N C:TYR157 4.3 17.4 1.0
CA C:PHE156 4.3 18.0 1.0
C C:TYR157 4.4 16.9 1.0
CG A:SAM1299 4.5 28.7 1.0
O C:PHE156 4.5 17.4 1.0
CG C:LEU17 4.5 18.8 1.0
CG C:PHE156 4.5 19.4 1.0
SD A:SAM1299 4.5 29.8 1.0
CD1 C:LEU17 4.6 16.1 1.0
OG1 C:THR75 4.6 19.0 1.0
CB C:TYR77 4.7 16.1 1.0
O4' A:SAM1299 4.8 24.1 1.0
C2' A:SAM1299 4.9 24.3 1.0
CZ C:PHE156 4.9 20.3 1.0
CA C:TYR157 4.9 17.2 1.0
OD1 C:ASP16 5.0 22.7 1.0

Reference:

X.Zhu, D.A.Robinson, A.R.Mcewan, D.O'hagan, J.H.Naismith. Mechanism of Enzymatic Fluorination in Streptomyces Cattleya. J. Am. Chem. Soc. V. 129 14597 2007.
ISSN: ESSN 1520-5126
PubMed: 17985882
DOI: 10.1021/JA0731569
Page generated: Sat Dec 12 09:19:58 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy