Chlorine in PDB 2va0: Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System

The structure of Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System, PDB code: 2va0 was solved by J.W.Murray, K.Emami, E.Topakas, T.Nagy, J.Henshaw, K.A.Jackson, K.E.Nelson, E.F.Mongodin, R.J.Lewis, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.037 / 2.60
Space group	P 21 21 2
Cell size a, b, c (Å), α, β, γ (°)	107.772, 80.014, 101.977, 90.00, 90.00, 90.00
R / Rfree (%)	19.94 / 25.88

The binding sites of Chlorine atom in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System (pdb code 2va0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System, PDB code: 2va0:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1149 b:7.3 occ:1.00 N A:THR133 3.3 2.8 1.0 N B:THR133 3.3 2.8 1.0 O B:HOH2023 3.5 2.0 1.0 CA A:ILE132 3.8 2.4 1.0 CD1 A:ILE63 3.9 2.0 1.0 CD1 B:ILE63 3.9 2.0 1.0 CA B:ILE132 3.9 2.3 1.0 C A:ILE132 4.0 2.6 1.0 O B:THR133 4.0 3.1 1.0 O A:THR133 4.1 3.1 1.0 CB A:ILE132 4.1 2.6 1.0 C B:ILE132 4.1 3.0 1.0 CB B:ILE132 4.1 2.0 1.0 CA A:THR133 4.3 2.9 1.0 CB A:THR133 4.3 3.3 1.0 CA B:THR133 4.3 2.8 1.0 CB B:THR133 4.4 3.0 1.0 OG1 A:THR133 4.4 4.9 1.0 O B:HOH2022 4.5 9.7 1.0 OG1 B:THR133 4.6 3.5 1.0 CG2 B:ILE132 4.6 2.0 1.0 CG2 A:ILE132 4.6 2.0 1.0 C B:THR133 4.6 3.0 1.0 C A:THR133 4.6 2.9 1.0 O A:HIS131 5.0 2.8 1.0

Chlorine binding site 2 out of 3 in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1148 b:3.1 occ:1.00 N C:THR133 3.3 2.9 1.0 N D:THR133 3.4 2.8 1.0 O D:HOH2020 3.7 2.0 1.0 CA C:ILE132 3.8 2.5 1.0 O D:HOH2018 3.8 2.0 1.0 CA D:ILE132 3.9 2.3 1.0 CD1 D:ILE63 3.9 2.5 1.0 CD1 C:ILE63 4.0 2.0 1.0 O C:THR133 4.0 2.7 1.0 C C:ILE132 4.0 2.9 1.0 CB C:ILE132 4.1 2.3 1.0 CB D:ILE132 4.1 2.3 1.0 O D:THR133 4.1 3.0 1.0 C D:ILE132 4.2 3.1 1.0 CA C:THR133 4.3 2.9 1.0 CB D:THR133 4.3 3.2 1.0 CB C:THR133 4.4 3.2 1.0 CA D:THR133 4.4 2.9 1.0 O D:HOH2019 4.4 7.7 1.0 CG2 D:ILE132 4.5 2.0 1.0 CG2 C:ILE132 4.6 2.0 1.0 C C:THR133 4.6 2.7 1.0 OG1 D:THR133 4.6 4.7 1.0 OG1 C:THR133 4.6 4.3 1.0 C D:THR133 4.7 2.9 1.0 O C:HIS131 4.8 2.7 1.0

Chlorine binding site 3 out of 3 in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System within 5.0Å range: probe atom residue distance (Å) B Occ F:Cl1149 b:8.6 occ:1.00 N F:THR133 3.1 2.6 1.0 N E:THR133 3.4 2.9 1.0 CA F:ILE132 3.8 2.4 1.0 CD1 E:ILE63 3.9 2.0 1.0 CD1 F:ILE63 3.9 4.0 1.0 CA E:ILE132 3.9 2.6 1.0 C F:ILE132 3.9 2.9 1.0 O F:THR133 3.9 3.3 1.0 CA F:THR133 4.1 2.8 1.0 CB F:ILE132 4.1 2.1 1.0 CB F:THR133 4.1 2.2 1.0 C E:ILE132 4.2 2.9 1.0 O E:THR133 4.2 3.1 1.0 CB E:ILE132 4.2 2.8 1.0 CB E:THR133 4.4 3.1 1.0 CA E:THR133 4.4 2.9 1.0 C F:THR133 4.5 2.8 1.0 OG1 F:THR133 4.5 3.7 1.0 OG1 E:THR133 4.6 5.2 1.0 CG2 E:ILE132 4.6 2.7 1.0 CG2 F:ILE132 4.7 2.0 1.0 C E:THR133 4.8 2.9 1.0 O E:HIS131 4.9 2.9 1.0

K.Emami, E.Topakas, T.Nagy, J.Henshaw, K.A.Jackson, K.E.Nelson, E.F.Mongodin, J.W.Murray, R.J.Lewis, H.J.Gilbert. Regulation of the Xylan-Degrading Apparatus of Cellvibrio Japonicus By A Novel Two-Component System. J.Biol.Chem. V. 284 1086 2009.
ISSN: ISSN 0021-9258
PubMed: 18922794
DOI: 10.1074/JBC.M805100200