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Chlorine in PDB 2va0: Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System

Protein crystallography data

The structure of Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System, PDB code: 2va0 was solved by J.W.Murray, K.Emami, E.Topakas, T.Nagy, J.Henshaw, K.A.Jackson, K.E.Nelson, E.F.Mongodin, R.J.Lewis, H.J.Gilbert, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 37.037 / 2.60
Space group P 21 21 2
Cell size a, b, c (Å), α, β, γ (°) 107.772, 80.014, 101.977, 90.00, 90.00, 90.00
R / Rfree (%) 19.94 / 25.88

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System (pdb code 2va0). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 3 binding sites of Chlorine where determined in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System, PDB code: 2va0:
Jump to Chlorine binding site number: 1; 2; 3;

Chlorine binding site 1 out of 3 in 2va0

Go back to Chlorine Binding Sites List in 2va0
Chlorine binding site 1 out of 3 in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1149

b:7.3
occ:1.00
N A:THR133 3.3 2.8 1.0
N B:THR133 3.3 2.8 1.0
O B:HOH2023 3.5 2.0 1.0
CA A:ILE132 3.8 2.4 1.0
CD1 A:ILE63 3.9 2.0 1.0
CD1 B:ILE63 3.9 2.0 1.0
CA B:ILE132 3.9 2.3 1.0
C A:ILE132 4.0 2.6 1.0
O B:THR133 4.0 3.1 1.0
O A:THR133 4.1 3.1 1.0
CB A:ILE132 4.1 2.6 1.0
C B:ILE132 4.1 3.0 1.0
CB B:ILE132 4.1 2.0 1.0
CA A:THR133 4.3 2.9 1.0
CB A:THR133 4.3 3.3 1.0
CA B:THR133 4.3 2.8 1.0
CB B:THR133 4.4 3.0 1.0
OG1 A:THR133 4.4 4.9 1.0
O B:HOH2022 4.5 9.7 1.0
OG1 B:THR133 4.6 3.5 1.0
CG2 B:ILE132 4.6 2.0 1.0
CG2 A:ILE132 4.6 2.0 1.0
C B:THR133 4.6 3.0 1.0
C A:THR133 4.6 2.9 1.0
O A:HIS131 5.0 2.8 1.0

Chlorine binding site 2 out of 3 in 2va0

Go back to Chlorine Binding Sites List in 2va0
Chlorine binding site 2 out of 3 in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Cl1148

b:3.1
occ:1.00
N C:THR133 3.3 2.9 1.0
N D:THR133 3.4 2.8 1.0
O D:HOH2020 3.7 2.0 1.0
CA C:ILE132 3.8 2.5 1.0
O D:HOH2018 3.8 2.0 1.0
CA D:ILE132 3.9 2.3 1.0
CD1 D:ILE63 3.9 2.5 1.0
CD1 C:ILE63 4.0 2.0 1.0
O C:THR133 4.0 2.7 1.0
C C:ILE132 4.0 2.9 1.0
CB C:ILE132 4.1 2.3 1.0
CB D:ILE132 4.1 2.3 1.0
O D:THR133 4.1 3.0 1.0
C D:ILE132 4.2 3.1 1.0
CA C:THR133 4.3 2.9 1.0
CB D:THR133 4.3 3.2 1.0
CB C:THR133 4.4 3.2 1.0
CA D:THR133 4.4 2.9 1.0
O D:HOH2019 4.4 7.7 1.0
CG2 D:ILE132 4.5 2.0 1.0
CG2 C:ILE132 4.6 2.0 1.0
C C:THR133 4.6 2.7 1.0
OG1 D:THR133 4.6 4.7 1.0
OG1 C:THR133 4.6 4.3 1.0
C D:THR133 4.7 2.9 1.0
O C:HIS131 4.8 2.7 1.0

Chlorine binding site 3 out of 3 in 2va0

Go back to Chlorine Binding Sites List in 2va0
Chlorine binding site 3 out of 3 in the Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Differential Regulation of the Xylan Degrading Apparatus of Cellvibrio Japonicus By A Novel Two Component System within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Cl1149

b:8.6
occ:1.00
N F:THR133 3.1 2.6 1.0
N E:THR133 3.4 2.9 1.0
CA F:ILE132 3.8 2.4 1.0
CD1 E:ILE63 3.9 2.0 1.0
CD1 F:ILE63 3.9 4.0 1.0
CA E:ILE132 3.9 2.6 1.0
C F:ILE132 3.9 2.9 1.0
O F:THR133 3.9 3.3 1.0
CA F:THR133 4.1 2.8 1.0
CB F:ILE132 4.1 2.1 1.0
CB F:THR133 4.1 2.2 1.0
C E:ILE132 4.2 2.9 1.0
O E:THR133 4.2 3.1 1.0
CB E:ILE132 4.2 2.8 1.0
CB E:THR133 4.4 3.1 1.0
CA E:THR133 4.4 2.9 1.0
C F:THR133 4.5 2.8 1.0
OG1 F:THR133 4.5 3.7 1.0
OG1 E:THR133 4.6 5.2 1.0
CG2 E:ILE132 4.6 2.7 1.0
CG2 F:ILE132 4.7 2.0 1.0
C E:THR133 4.8 2.9 1.0
O E:HIS131 4.9 2.9 1.0

Reference:

K.Emami, E.Topakas, T.Nagy, J.Henshaw, K.A.Jackson, K.E.Nelson, E.F.Mongodin, J.W.Murray, R.J.Lewis, H.J.Gilbert. Regulation of the Xylan-Degrading Apparatus of Cellvibrio Japonicus By A Novel Two-Component System. J.Biol.Chem. V. 284 1086 2009.
ISSN: ISSN 0021-9258
PubMed: 18922794
DOI: 10.1074/JBC.M805100200
Page generated: Sat Dec 12 09:20:07 2020

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