Chlorine in PDB 2vmc: Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine

The structure of Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine, PDB code: 2vmc was solved by K.Saboia, M.Satre, A.Imberty, A.Varrot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.60 / 1.90
Space group	H 3 2
Cell size a, b, c (Å), α, β, γ (°)	82.520, 82.520, 261.600, 90.00, 90.00, 120.00
R / Rfree (%)	15.7 / 19.8

The structure of Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine also contains other interesting chemical elements:

Calcium

(Ca)

1 atom

The binding sites of Chlorine atom in the Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine (pdb code 2vmc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine, PDB code: 2vmc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl498 b:15.7 occ:0.33 OG1 A:THR212 3.2 11.0 1.0 CG2 A:THR212 3.8 12.3 1.0 CB A:THR212 4.0 12.0 1.0 CA A:GLY215 4.1 13.5 1.0 O A:HOH2308 4.4 29.3 1.0 O A:GLY215 4.7 12.7 1.0 N A:GLY215 4.8 14.7 1.0 C A:GLY215 4.8 12.5 1.0

Chlorine binding site 2 out of 2 in the Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Complex of Discoidin II From Dictyostelium Discoideum with N-Acetyl-Galactosamine within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl499 b:20.3 occ:0.33 NE1 A:TRP219 3.7 14.5 1.0 CG A:MET217 4.4 10.2 1.0 CE2 A:TRP219 4.5 13.3 1.0 CG2 A:VAL208 4.5 10.1 1.0 CZ2 A:TRP219 4.5 14.8 1.0 CG1 A:VAL208 4.6 9.5 1.0 CD1 A:TRP219 4.7 12.1 1.0 CB A:VAL208 4.9 9.9 1.0 CE A:MET217 4.9 9.5 1.0

K.S.Aragao, M.Satre, A.Imberty, A.Varrot. Structure Determination of Discoidin II From Dictyostelium Discoideum and Carbohydrate Binding Properties of the Lectin Domain. Proteins V. 73 43 2008.
ISSN: ISSN 0887-3585
PubMed: 18384150
DOI: 10.1002/PROT.22038