Chlorine in PDB 2vme: Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum

The structure of Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum, PDB code: 2vme was solved by K.S.Aragao, M.Satre, A.Imberty, A.Varrot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	26.80 / 2.45
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	287.885, 56.281, 123.674, 90.00, 109.10, 90.00
R / Rfree (%)	18.1 / 23.8

The structure of Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum also contains other interesting chemical elements:

Calcium	(Ca)	6 atoms
Zinc	(Zn)	2 atoms

The binding sites of Chlorine atom in the Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum (pdb code 2vme). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum, PDB code: 2vme:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl502 b:15.9 occ:1.00 NE1 B:TRP219 3.7 19.0 1.0 NE1 C:TRP219 3.8 15.6 1.0 NE1 A:TRP219 3.8 14.4 1.0 CG1 A:VAL208 4.2 17.1 1.0 CG A:MET217 4.3 19.5 1.0 CG2 A:VAL208 4.3 14.9 1.0 CG B:MET217 4.3 18.8 1.0 CG2 C:VAL208 4.4 15.9 1.0 CG1 C:VAL208 4.4 14.9 1.0 CG1 B:VAL208 4.4 19.3 1.0 CG2 B:VAL208 4.5 19.6 1.0 CG C:MET217 4.5 18.2 1.0 CE2 C:TRP219 4.5 17.7 1.0 CB A:VAL208 4.6 17.7 1.0 CE2 B:TRP219 4.6 18.1 1.0 CE2 A:TRP219 4.6 14.8 1.0 CZ2 C:TRP219 4.6 18.1 1.0 CZ2 A:TRP219 4.6 16.4 1.0 CD1 B:TRP219 4.7 19.0 1.0 CB C:VAL208 4.7 17.4 1.0 CB B:VAL208 4.7 21.2 1.0 CZ2 B:TRP219 4.7 19.6 1.0 CD1 C:TRP219 4.8 17.3 1.0 CE C:MET217 4.8 15.2 1.0 CD1 A:TRP219 4.9 15.0 1.0 CE B:MET217 5.0 20.1 1.0

Chlorine binding site 2 out of 2 in the Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of the Wild-Type Discoidin II From Dictyostelium Discoideum within 5.0Å range: probe atom residue distance (Å) B Occ D:Cl502 b:26.7 occ:1.00 NE1 F:TRP219 3.7 24.9 1.0 NE1 E:TRP219 3.8 18.1 1.0 NE1 D:TRP219 3.8 12.7 1.0 CG E:MET217 4.2 19.4 1.0 CG2 D:VAL208 4.2 21.9 1.0 CG D:MET217 4.3 22.4 1.0 CG F:MET217 4.4 24.9 1.0 CG2 E:VAL208 4.5 20.2 1.0 CG1 D:VAL208 4.5 20.3 1.0 CG1 F:VAL208 4.5 23.3 1.0 CG2 F:VAL208 4.5 22.0 1.0 CE2 F:TRP219 4.5 24.7 1.0 CZ2 F:TRP219 4.6 25.4 1.0 CG1 E:VAL208 4.6 20.2 1.0 CB D:VAL208 4.6 21.2 1.0 CE D:MET217 4.6 24.0 1.0 CE2 E:TRP219 4.7 18.2 1.0 CB F:VAL208 4.7 23.2 1.0 CE2 D:TRP219 4.7 12.7 1.0 CD1 E:TRP219 4.7 17.7 1.0 CB E:VAL208 4.8 22.3 1.0 CD1 F:TRP219 4.8 24.7 1.0 CD1 D:TRP219 4.8 14.2 1.0 CZ2 E:TRP219 4.8 17.0 1.0 CZ2 D:TRP219 4.9 15.2 1.0 SD E:MET217 5.0 23.6 1.0

K.S.Aragao, M.Satre, A.Imberty, A.Varrot. Structure Determination of Discoidin II From Dictyostelium Discoideum and Carbohydrate Binding Properties of the Lectin Domain. Proteins V. 73 43 2008.
ISSN: ISSN 0887-3585
PubMed: 18384150
DOI: 10.1002/PROT.22038