Chlorine in PDB 2vrp: Structure of Rhodocytin

The structure of Structure of Rhodocytin, PDB code: 2vrp was solved by A.A.Watson, C.A.O'callaghan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.76 / 2.41
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	61.933, 89.368, 120.996, 90.00, 90.00, 90.00
R / Rfree (%)	20.1 / 27.2

The structure of Structure of Rhodocytin also contains other interesting chemical elements:

Sodium

(Na)

4 atoms

The binding sites of Chlorine atom in the Structure of Rhodocytin (pdb code 2vrp). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Structure of Rhodocytin, PDB code: 2vrp:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Structure of Rhodocytin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Rhodocytin within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1125 b:47.2 occ:1.00 N B:GLU95 3.0 43.1 1.0 CA B:ASN70 3.4 41.2 1.0 N B:TRP72 3.5 42.6 1.0 CD2 B:HIS73 3.5 60.2 1.0 N B:ILE71 3.5 41.6 1.0 C B:ASN70 3.5 41.3 1.0 CA B:SER94 3.6 46.9 1.0 OG B:SER94 3.7 49.9 1.0 C B:SER94 3.8 44.9 1.0 CB B:TRP72 3.8 40.7 1.0 O B:GLU95 3.9 40.7 1.0 CA B:TRP72 4.0 42.7 1.0 CA B:GLU95 4.0 41.5 1.0 N B:HIS73 4.0 46.5 1.0 C B:TRP72 4.1 44.4 1.0 O B:GLN93 4.2 51.7 1.0 CB B:ASN70 4.3 41.5 1.0 O B:ASN70 4.3 41.6 1.0 CB B:SER94 4.3 47.2 1.0 CD1 B:TRP72 4.3 37.1 1.0 CB B:GLU95 4.3 41.0 1.0 CG B:TRP72 4.3 39.5 1.0 CG B:HIS73 4.4 55.6 1.0 C B:GLU95 4.4 40.9 1.0 N B:ASN70 4.5 40.2 1.0 NE2 B:HIS73 4.5 62.3 1.0 C B:ILE71 4.5 42.0 1.0 ND2 B:ASN70 4.6 41.0 1.0 N B:SER94 4.6 49.5 1.0 CA B:ILE71 4.6 41.2 1.0 CB B:HIS73 4.7 49.7 1.0 CA B:HIS73 4.8 48.6 1.0 C B:GLN93 4.8 51.7 1.0 O B:TRP72 4.8 44.8 1.0 CG1 B:ILE71 4.9 38.0 1.0 CG B:ASN70 4.9 42.3 1.0 O B:SER94 5.0 43.9 1.0

Chlorine binding site 2 out of 2 in the Structure of Rhodocytin


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Rhodocytin within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1126 b:53.4 occ:1.00 N B:ASN18 3.7 37.7 1.0 O B:ASN18 3.8 42.3 1.0 C B:ASN18 4.2 40.6 1.0 CA B:ASN18 4.3 39.6 1.0 CB B:ASN18 4.3 39.7 1.0 CA B:PHE17 4.5 35.0 1.0 C B:PHE17 4.5 36.1 1.0 CB B:GLU19 4.5 42.4 1.0 CD1 B:PHE17 4.8 35.4 1.0 OE2 B:GLU19 4.8 49.4 1.0 CB B:PHE17 4.9 34.9 1.0 N B:GLU19 4.9 41.2 1.0

A.A.Watson, J.A.Eble, C.A.O'callaghan. Crystal Structure of Rhodocytin, A Ligand For the Platelet-Activating Receptor Clec-2. Protein Sci. V. 17 1611 2008.
ISSN: ISSN 0961-8368
PubMed: 18583525
DOI: 10.1110/PS.035568.108