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Chlorine in PDB 2vvv: Aminopyrrolidine-Related Triazole Factor Xa Inhibitor

Enzymatic activity of Aminopyrrolidine-Related Triazole Factor Xa Inhibitor

All present enzymatic activity of Aminopyrrolidine-Related Triazole Factor Xa Inhibitor:
3.4.21.6;

Protein crystallography data

The structure of Aminopyrrolidine-Related Triazole Factor Xa Inhibitor, PDB code: 2vvv was solved by K.Groebke-Zbinden, D.W.Banner, J.M.Benz, F.Blasco, G.Decoret, J.Himber, B.Kuhn, N.Panday, F.Ricklin, P.Risch, D.Schlatter, M.Stahl, R.Unger, W.Haap, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 53.68 / 1.73
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 48.830, 74.790, 77.150, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 25.1

Other elements in 2vvv:

The structure of Aminopyrrolidine-Related Triazole Factor Xa Inhibitor also contains other interesting chemical elements:

Fluorine (F) 1 atom
Calcium (Ca) 1 atom
Sodium (Na) 1 atom

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Aminopyrrolidine-Related Triazole Factor Xa Inhibitor (pdb code 2vvv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Aminopyrrolidine-Related Triazole Factor Xa Inhibitor, PDB code: 2vvv:

Chlorine binding site 1 out of 1 in 2vvv

Go back to Chlorine Binding Sites List in 2vvv
Chlorine binding site 1 out of 1 in the Aminopyrrolidine-Related Triazole Factor Xa Inhibitor


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Aminopyrrolidine-Related Triazole Factor Xa Inhibitor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1245

b:16.1
occ:1.00
CL1 A:H211245 0.0 16.1 1.0
C10 A:H211245 1.7 16.6 1.0
C19 A:H211245 2.8 16.6 1.0
S3 A:H211245 2.9 16.7 1.0
CA A:GLY226 3.5 13.7 1.0
CZ A:TYR228 3.6 13.9 1.0
N A:ILE227 3.6 12.7 1.0
CG1 A:VAL213 3.7 12.9 1.0
O A:ILE227 3.7 12.8 1.0
CE2 A:TYR228 3.7 12.9 1.0
OH A:TYR228 3.7 13.7 1.0
CB A:ALA190 3.8 15.4 1.0
C A:GLY226 3.8 13.2 1.0
C12 A:H211245 3.9 16.5 1.0
O A:TRP215 4.0 14.8 1.0
CE1 A:TYR228 4.0 13.2 1.0
C2 A:H211245 4.1 18.2 1.0
C A:ILE227 4.3 14.2 1.0
CD2 A:TYR228 4.3 13.3 1.0
OD1 A:ASP189 4.4 15.7 1.0
O A:HOH2308 4.5 11.3 1.0
N A:SER214 4.5 13.3 1.0
CD1 A:TYR228 4.5 12.3 1.0
CA A:ILE227 4.6 13.0 1.0
CA A:VAL213 4.6 12.5 1.0
CB A:VAL213 4.6 12.4 1.0
CG A:TYR228 4.7 12.1 1.0
O A:GLY226 4.7 13.1 1.0
C A:TRP215 4.7 16.3 1.0
N A:TRP215 4.8 15.3 1.0
CA A:ALA190 4.8 15.1 1.0
CG2 A:VAL213 4.9 13.3 1.0
N A:ALA190 4.9 14.9 1.0
N A:GLY226 4.9 14.4 1.0
C A:VAL213 5.0 13.4 1.0

Reference:

K.G.Zbinden, L.Anselm, D.W.Banner, J.M.Benz, F.Blasco, G.Decoret, J.Himber, B.Kuhn, N.Panday, F.Ricklin, P.Risch, D.Schlatter, M.Stahl, S.Thomi, R.Unger, W.Haap. Design of Novel Aminopyrrolidine Factor Xa Inhibitors From A Screening Hit. Eur.J.Med.Chem. V. 44 2787 2009.
ISSN: ISSN 0223-5234
PubMed: 19200624
DOI: 10.1016/J.EJMECH.2008.12.025
Page generated: Sat Jul 20 12:19:14 2024

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