Chlorine in PDB 2vwd: Nipah Virus Attachment Glycoprotein

The structure of Nipah Virus Attachment Glycoprotein, PDB code: 2vwd was solved by T.A.Bowden, M.Crispin, D.J.Harvey, A.R.Aricescu, J.M.Grimes, E.Y.Jones, D.I.Stuart, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.94 / 2.25
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	71.633, 86.936, 82.903, 90.00, 108.32, 90.00
R / Rfree (%)	17.2 / 22.1

The binding sites of Chlorine atom in the Nipah Virus Attachment Glycoprotein (pdb code 2vwd). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Nipah Virus Attachment Glycoprotein, PDB code: 2vwd:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in the Nipah Virus Attachment Glycoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Nipah Virus Attachment Glycoprotein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1603 b:15.6 occ:1.00 OG B:SER311 3.1 18.6 1.0 N B:SER311 3.4 20.4 1.0 N B:THR299 3.4 20.6 1.0 CB B:SER311 3.5 20.2 1.0 CA B:SER298 3.7 20.5 1.0 CD1 B:TRP310 3.8 19.5 1.0 OG1 B:THR299 3.8 20.4 1.0 OG B:SER298 4.0 19.9 1.0 CG1 B:VAL300 4.1 20.6 1.0 C B:SER298 4.1 20.8 1.0 CA B:SER311 4.1 20.5 1.0 O B:VAL297 4.2 20.1 1.0 CA B:TRP310 4.3 20.6 1.0 CB B:SER298 4.3 20.7 1.0 CG2 B:VAL300 4.3 21.1 1.0 C B:TRP310 4.3 20.5 1.0 N B:VAL300 4.3 20.6 1.0 O B:TYR309 4.4 20.4 1.0 CA B:THR299 4.4 20.6 1.0 NE1 B:TRP310 4.5 19.2 1.0 CB B:THR299 4.7 20.4 1.0 C B:THR299 4.7 20.5 1.0 CB B:VAL300 4.7 20.8 1.0 CG B:TRP310 4.7 19.9 1.0 N B:SER298 4.8 20.5 1.0 C B:VAL297 4.9 20.5 1.0

Chlorine binding site 2 out of 2 in the Nipah Virus Attachment Glycoprotein


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Nipah Virus Attachment Glycoprotein within 5.0Å range: probe atom residue distance (Å) B Occ B:Cl1604 b:22.3 occ:1.00 O B:HOH2152 3.0 16.3 1.0 N B:LYS376 3.3 25.4 1.0 NH1 B:ARG344 3.4 29.6 1.0 NH2 B:ARG344 3.4 30.7 1.0 CD2 B:LEU370 3.7 21.1 1.0 CD1 B:PHE375 3.7 24.0 1.0 CZ B:ARG344 3.9 29.8 1.0 CA B:PHE375 4.0 24.8 1.0 CB B:LYS376 4.1 25.9 1.0 C B:PHE375 4.2 25.0 1.0 CA B:LYS376 4.2 25.4 1.0 CG B:LYS376 4.2 27.1 1.0 CE1 B:PHE375 4.3 24.0 1.0 O B:GLU374 4.3 24.9 1.0 O B:LYS376 4.3 25.0 1.0 NH1 B:ARG410 4.4 24.3 1.0 O B:HOH2161 4.4 36.1 1.0 CG B:PHE375 4.6 24.5 1.0 C B:LYS376 4.7 25.0 1.0 CB B:PHE375 4.8 24.6 1.0 N B:PHE375 4.9 24.7 1.0 C B:GLU374 5.0 24.8 1.0

T.A.Bowden, M.Crispin, D.J.Harvey, A.R.Aricescu, J.M.Grimes, E.Y.Jones, D.I.Stuart. Crystal Structure and Carbohydrate Analysis of Nipah Virus Attachment Glycoprotein: A Template For Antiviral and Vaccine Design. J.Virol. V. 82 11628 2008.
ISSN: ISSN 0022-538X
PubMed: 18815311
DOI: 10.1128/JVI.01344-08