Chlorine in PDB 2w1y: The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Enzymatic activity of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
All present enzymatic activity of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data:
3.2.1.17;
Protein crystallography data
The structure of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data, PDB code: 2w1y
was solved by
M.Cianci,
J.R.Helliwell,
A.Suzuki,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
55.38 /
1.73
|
Space group
|
P 43 21 2
|
Cell size a, b, c (Å), α, β, γ (°)
|
78.318,
78.318,
36.990,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
17.4 /
21.4
|
Other elements in 2w1y:
The structure of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data also contains other interesting chemical elements:
Chlorine Binding Sites:
The binding sites of Chlorine atom in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
(pdb code 2w1y). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 8 binding sites of Chlorine where determined in the
The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data, PDB code: 2w1y:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
Chlorine binding site 1 out
of 8 in 2w1y
Go back to
Chlorine Binding Sites List in 2w1y
Chlorine binding site 1 out
of 8 in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1130
b:18.7
occ:1.00
|
OH
|
A:TYR23
|
3.0
|
11.2
|
1.0
|
O
|
A:HOH2028
|
3.3
|
18.8
|
1.0
|
CZ
|
A:TYR23
|
3.7
|
12.8
|
1.0
|
CE2
|
A:TYR23
|
3.7
|
12.0
|
1.0
|
CA
|
A:GLY104
|
4.1
|
12.5
|
1.0
|
O
|
A:ARG21
|
4.6
|
14.8
|
1.0
|
N
|
A:GLY104
|
4.7
|
13.7
|
1.0
|
CE1
|
A:TYR23
|
4.9
|
12.1
|
1.0
|
CD2
|
A:TYR23
|
4.9
|
10.4
|
1.0
|
|
Chlorine binding site 2 out
of 8 in 2w1y
Go back to
Chlorine Binding Sites List in 2w1y
Chlorine binding site 2 out
of 8 in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1131
b:24.3
occ:1.00
|
OG
|
A:SER24
|
3.0
|
16.4
|
1.0
|
N
|
A:GLY26
|
3.2
|
11.1
|
1.0
|
CB
|
A:SER24
|
3.5
|
15.3
|
1.0
|
CA
|
A:GLY26
|
3.5
|
11.7
|
1.0
|
CA
|
A:GLN121
|
3.7
|
16.7
|
1.0
|
N
|
A:GLN121
|
3.9
|
15.6
|
1.0
|
CB
|
A:GLN121
|
4.0
|
18.1
|
1.0
|
CD1
|
A:ILE124
|
4.0
|
21.2
|
1.0
|
CG
|
A:GLN121
|
4.2
|
23.6
|
1.0
|
CG1
|
A:ILE124
|
4.3
|
18.5
|
1.0
|
N
|
A:LEU25
|
4.3
|
13.1
|
1.0
|
C
|
A:VAL120
|
4.3
|
15.0
|
1.0
|
O
|
A:VAL120
|
4.3
|
15.4
|
1.0
|
CG2
|
A:VAL120
|
4.3
|
16.5
|
1.0
|
C
|
A:LEU25
|
4.4
|
11.9
|
1.0
|
C
|
A:SER24
|
4.4
|
13.7
|
1.0
|
CA
|
A:SER24
|
4.6
|
13.4
|
1.0
|
C
|
A:GLY26
|
4.6
|
11.2
|
1.0
|
N
|
A:ASN27
|
4.6
|
11.4
|
1.0
|
CA
|
A:LEU25
|
4.8
|
12.1
|
1.0
|
O
|
A:SER24
|
4.8
|
13.3
|
1.0
|
C
|
A:GLN121
|
4.9
|
15.3
|
1.0
|
|
Chlorine binding site 3 out
of 8 in 2w1y
Go back to
Chlorine Binding Sites List in 2w1y
Chlorine binding site 3 out
of 8 in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1132
b:22.1
occ:1.00
|
O
|
A:HOH2029
|
2.9
|
32.3
|
1.0
|
N
|
A:THR69
|
3.1
|
14.6
|
1.0
|
O
|
A:HOH2077
|
3.1
|
13.3
|
1.0
|
O
|
A:THR69
|
3.3
|
15.8
|
1.0
|
N
|
A:ARG68
|
3.4
|
13.9
|
1.0
|
O
|
A:HOH2075
|
3.4
|
33.0
|
1.0
|
C
|
A:GLY67
|
3.5
|
14.8
|
1.0
|
CA
|
A:GLY67
|
3.6
|
14.1
|
1.0
|
OD1
|
A:ASN65
|
3.6
|
17.8
|
1.0
|
C
|
A:THR69
|
3.6
|
16.6
|
1.0
|
N
|
A:GLY67
|
3.6
|
13.3
|
1.0
|
OG
|
A:SER72
|
3.7
|
25.3
|
1.0
|
CA
|
A:THR69
|
3.8
|
15.0
|
1.0
|
O
|
A:HOH2082
|
4.0
|
18.1
|
1.0
|
C
|
A:ARG68
|
4.1
|
14.5
|
1.0
|
CB
|
A:THR69
|
4.1
|
14.9
|
1.0
|
OD1
|
A:ASP66
|
4.2
|
11.9
|
1.0
|
O
|
A:GLY67
|
4.2
|
16.6
|
1.0
|
CA
|
A:ARG68
|
4.2
|
14.1
|
1.0
|
N
|
A:PRO70
|
4.4
|
18.2
|
1.0
|
NA
|
A:NA1138
|
4.5
|
24.8
|
1.0
|
OG1
|
A:THR69
|
4.7
|
13.9
|
1.0
|
C
|
A:ASP66
|
4.7
|
13.1
|
1.0
|
CG
|
A:ASN65
|
4.8
|
14.3
|
1.0
|
N
|
A:ASP66
|
4.8
|
11.3
|
1.0
|
O
|
A:HOH2081
|
4.8
|
20.7
|
0.5
|
CA
|
A:PRO70
|
5.0
|
20.2
|
1.0
|
|
Chlorine binding site 4 out
of 8 in 2w1y
Go back to
Chlorine Binding Sites List in 2w1y
Chlorine binding site 4 out
of 8 in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1133
b:34.7
occ:1.00
|
N
|
A:ILE88
|
3.1
|
14.2
|
1.0
|
O
|
A:HOH2097
|
3.2
|
31.5
|
1.0
|
CA
|
A:ASP87
|
3.6
|
17.4
|
1.0
|
CG1
|
A:ILE88
|
3.7
|
12.6
|
1.0
|
O
|
A:HOH2019
|
3.7
|
30.4
|
1.0
|
CE1
|
A:HIS15
|
3.7
|
17.0
|
1.0
|
C
|
A:ASP87
|
3.9
|
15.2
|
1.0
|
O
|
A:SER86
|
4.0
|
17.9
|
1.0
|
O
|
A:HOH2100
|
4.1
|
33.2
|
1.0
|
CG2
|
A:ILE88
|
4.1
|
12.9
|
1.0
|
CG
|
A:ASP87
|
4.1
|
23.6
|
1.0
|
CB
|
A:ILE88
|
4.2
|
14.1
|
1.0
|
CA
|
A:ILE88
|
4.2
|
13.5
|
1.0
|
OD1
|
A:ASP87
|
4.2
|
21.0
|
1.0
|
CB
|
A:ALA11
|
4.3
|
13.6
|
1.0
|
CZ
|
A:PHE3
|
4.3
|
15.1
|
1.0
|
OD2
|
A:ASP87
|
4.4
|
28.9
|
1.0
|
NE2
|
A:HIS15
|
4.4
|
19.6
|
1.0
|
CB
|
A:ASP87
|
4.4
|
18.1
|
1.0
|
ND1
|
A:HIS15
|
4.6
|
19.5
|
1.0
|
CD1
|
A:ILE88
|
4.7
|
12.4
|
1.0
|
N
|
A:ASP87
|
4.7
|
15.9
|
1.0
|
C
|
A:SER86
|
4.8
|
17.6
|
1.0
|
N
|
A:THR89
|
4.9
|
14.2
|
1.0
|
C
|
A:ILE88
|
5.0
|
13.8
|
1.0
|
CE2
|
A:PHE3
|
5.0
|
14.3
|
1.0
|
|
Chlorine binding site 5 out
of 8 in 2w1y
Go back to
Chlorine Binding Sites List in 2w1y
Chlorine binding site 5 out
of 8 in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1134
b:33.6
occ:1.00
|
CE2
|
A:PHE38
|
3.7
|
10.3
|
1.0
|
NZ
|
A:LYS33
|
4.0
|
23.3
|
1.0
|
CZ3
|
A:TRP123
|
4.0
|
15.8
|
1.0
|
CB
|
A:ARG5
|
4.2
|
15.4
|
1.0
|
CE
|
A:LYS33
|
4.2
|
20.6
|
1.0
|
CD
|
A:ARG5
|
4.2
|
16.7
|
1.0
|
CZ
|
A:PHE38
|
4.4
|
12.8
|
1.0
|
CD
|
A:LYS33
|
4.5
|
16.6
|
1.0
|
CD2
|
A:PHE38
|
4.6
|
10.5
|
1.0
|
CG
|
A:ARG5
|
4.6
|
13.9
|
1.0
|
NE
|
A:ARG5
|
4.7
|
18.9
|
1.0
|
O
|
A:HOH2007
|
4.8
|
40.5
|
1.0
|
CH2
|
A:TRP123
|
4.8
|
15.3
|
1.0
|
CE3
|
A:TRP123
|
4.9
|
13.3
|
1.0
|
|
Chlorine binding site 6 out
of 8 in 2w1y
Go back to
Chlorine Binding Sites List in 2w1y
Chlorine binding site 6 out
of 8 in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1135
b:37.2
occ:1.00
|
O
|
A:HOH2085
|
3.0
|
29.4
|
1.0
|
ND2
|
A:ASN65
|
3.3
|
18.1
|
1.0
|
CB
|
A:PRO79
|
3.7
|
13.8
|
1.0
|
CA
|
A:PRO79
|
3.7
|
14.2
|
1.0
|
CB
|
A:ASN65
|
3.9
|
14.1
|
1.0
|
N
|
A:PRO79
|
4.0
|
14.4
|
1.0
|
CG
|
A:ASN65
|
4.1
|
14.3
|
1.0
|
CD
|
A:PRO79
|
4.3
|
14.8
|
1.0
|
O
|
A:ASN65
|
4.3
|
11.0
|
1.0
|
CG
|
A:PRO79
|
4.5
|
16.5
|
1.0
|
C
|
A:ILE78
|
4.6
|
14.9
|
1.0
|
O
|
A:ILE78
|
4.8
|
14.5
|
1.0
|
C
|
A:ASN65
|
4.9
|
11.8
|
1.0
|
CA
|
A:ASN65
|
4.9
|
12.4
|
1.0
|
ND2
|
A:ASN74
|
4.9
|
19.4
|
1.0
|
O
|
A:HOH2076
|
5.0
|
19.4
|
1.0
|
|
Chlorine binding site 7 out
of 8 in 2w1y
Go back to
Chlorine Binding Sites List in 2w1y
Chlorine binding site 7 out
of 8 in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1136
b:56.4
occ:1.00
|
N
|
A:ASN74
|
3.0
|
18.5
|
1.0
|
C
|
A:ASN74
|
3.4
|
16.9
|
1.0
|
CB
|
A:ARG73
|
3.5
|
22.5
|
1.0
|
O
|
A:ASN74
|
3.6
|
16.6
|
1.0
|
NE
|
A:ARG73
|
3.6
|
29.6
|
1.0
|
CA
|
A:ASN74
|
3.7
|
16.9
|
1.0
|
CA
|
A:ARG73
|
3.9
|
22.1
|
1.0
|
N
|
A:LEU75
|
3.9
|
16.1
|
1.0
|
CD2
|
A:LEU75
|
3.9
|
18.7
|
1.0
|
C
|
A:ARG73
|
3.9
|
21.1
|
1.0
|
CD
|
A:ARG73
|
4.1
|
26.2
|
1.0
|
CB
|
A:ASN74
|
4.1
|
17.9
|
1.0
|
CA
|
A:LEU75
|
4.3
|
15.8
|
1.0
|
CG
|
A:ARG73
|
4.4
|
23.4
|
1.0
|
CG
|
A:LEU75
|
4.5
|
18.4
|
1.0
|
CZ
|
A:ARG73
|
4.6
|
30.2
|
1.0
|
NH2
|
A:ARG73
|
4.7
|
32.9
|
1.0
|
|
Chlorine binding site 8 out
of 8 in 2w1y
Go back to
Chlorine Binding Sites List in 2w1y
Chlorine binding site 8 out
of 8 in the The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments: 1.540 A Wavelength 180 Images Data within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1137
b:33.6
occ:1.00
|
NH1
|
A:ARG68
|
2.8
|
15.2
|
1.0
|
CD
|
A:ARG68
|
3.5
|
14.0
|
1.0
|
CZ
|
A:ARG68
|
3.9
|
17.1
|
1.0
|
NE
|
A:ARG68
|
4.1
|
15.6
|
1.0
|
NH1
|
A:ARG45
|
4.8
|
21.8
|
1.0
|
CG
|
A:ARG68
|
4.8
|
14.0
|
1.0
|
CB
|
A:ARG68
|
4.9
|
14.2
|
1.0
|
|
Reference:
M.Cianci,
J.R.Helliwell,
A.Suzuki.
The Interdependence of Wavelength, Redundancy and Dose in Sulfur Sad Experiments. Acta Crystallogr.,Sect.D V. 64 1196 2008.
ISSN: ISSN 0907-4449
PubMed: 19018096
DOI: 10.1107/S0907444908030503
Page generated: Sat Jul 20 12:28:22 2024
|