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Chlorine in PDB 2w6z: Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment

Enzymatic activity of Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment

All present enzymatic activity of Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment:
6.3.4.14; 6.4.1.2;

Protein crystallography data

The structure of Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment, PDB code: 2w6z was solved by I.Mochalkin, J.R.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 20.00 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 84.482, 106.895, 122.413, 90.00, 90.00, 90.00
R / Rfree (%) 18.5 / 22

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment (pdb code 2w6z). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment, PDB code: 2w6z:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2w6z

Go back to Chlorine Binding Sites List in 2w6z
Chlorine binding site 1 out of 2 in the Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1448

b:21.5
occ:1.00
O A:HOH2200 2.8 21.8 1.0
N A:VAL295 3.4 17.4 1.0
NH2 A:ARG292 3.4 26.9 1.0
NE2 A:GLN294 3.6 27.2 1.0
CG2 A:VAL295 3.6 17.7 1.0
CA A:GLN294 3.7 18.8 1.0
CG A:GLN294 3.7 21.1 1.0
CB A:GLN294 3.8 19.1 1.0
NE A:ARG292 3.9 26.2 1.0
C A:GLN294 4.1 17.8 1.0
CB A:VAL295 4.1 16.5 1.0
CZ A:ARG292 4.1 27.3 1.0
CD A:GLN294 4.1 22.7 1.0
CB A:TYR82 4.2 17.7 1.0
CA A:VAL295 4.3 16.9 1.0
CG A:TYR82 4.4 17.2 1.0
OE2 A:GLU296 4.5 19.6 1.0
O A:ILE293 4.7 18.7 1.0
CD1 A:TYR82 4.7 19.1 1.0
CD2 A:TYR82 4.8 18.1 1.0

Chlorine binding site 2 out of 2 in 2w6z

Go back to Chlorine Binding Sites List in 2w6z
Chlorine binding site 2 out of 2 in the Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of Biotin Carboxylase From E. Coli in Complex with the 3-(3-Methyl-But-2-Enyl)-3H-Purin-6- Ylamine Fragment within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1446

b:29.1
occ:1.00
NH1 B:ARG292 2.9 23.8 1.0
O B:HOH2124 2.9 25.0 1.0
N B:VAL295 3.2 16.8 1.0
O B:HOH2061 3.2 29.5 1.0
CG2 B:VAL295 3.5 17.3 1.0
O B:HOH2123 3.5 33.5 1.0
CA B:GLN294 3.6 17.7 1.0
CZ B:ARG292 3.7 22.9 1.0
CB B:GLN294 3.8 17.9 1.0
NH2 B:ARG292 3.9 22.8 1.0
C B:GLN294 3.9 17.2 1.0
CB B:VAL295 3.9 16.5 1.0
CG B:GLN294 4.1 19.1 1.0
CA B:VAL295 4.1 16.6 1.0
CB B:TYR82 4.3 16.7 1.0
CG B:TYR82 4.3 16.2 1.0
OE2 B:GLU296 4.4 17.5 1.0
CD2 B:TYR82 4.6 17.2 1.0
O B:ILE293 4.7 17.2 1.0
CD1 B:TYR82 4.7 16.0 1.0
OE1 B:GLN294 4.8 25.2 1.0
CD B:GLN294 4.8 19.5 1.0
NE B:ARG292 4.9 21.4 1.0
N B:GLN294 4.9 17.5 1.0
NH2 B:ARG338 4.9 17.0 1.0

Reference:

I.Mochalkin, J.R.Miller, L.S.Narasimhan, V.Thanabal, P.Erdman, P.Cox, J.V.Prasad, S.Lightle, M.Huband, K.Stover. Discovery of Antibacterial Biotin Carboxylase Inhibitors By Virtual Screening and Fragment-Based Approaches. Acs Chem.Biol. V. 4 473 2009.
ISSN: ISSN 1554-8929
PubMed: 19413326
DOI: 10.1021/CB9000102
Page generated: Sat Jul 20 12:35:30 2024

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