Chlorine in PDB 2wgs: Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.:
6.3.1.2;
Protein crystallography data
The structure of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor., PDB code: 2wgs
was solved by
M.T.Nilsson,
W.W.Krajewski,
T.A.Jones,
S.L.Mowbray,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
29.95 /
2.55
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
134.950,
203.180,
230.200,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23 /
24.6
|
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
20;
Page 3, Binding sites: 21 -
30;
Page 4, Binding sites: 31 -
36;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
(pdb code 2wgs). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 36 binding sites of Chlorine where determined in the
Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor., PDB code: 2wgs:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 36 in 2wgs
Go back to
Chlorine Binding Sites List in 2wgs
Chlorine binding site 1 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl501
b:49.7
occ:1.00
|
CL1
|
A:1AZ501
|
0.0
|
49.7
|
1.0
|
C1
|
A:1AZ501
|
1.8
|
48.7
|
1.0
|
C18
|
A:1AZ501
|
2.8
|
48.5
|
1.0
|
C2
|
A:1AZ501
|
2.8
|
48.5
|
1.0
|
CL2
|
A:1AZ501
|
3.1
|
49.9
|
1.0
|
C17
|
A:1AZ501
|
4.1
|
48.6
|
1.0
|
C3
|
A:1AZ501
|
4.1
|
48.7
|
1.0
|
CB
|
A:LYS361
|
4.1
|
57.1
|
1.0
|
CH2
|
A:TRP282
|
4.4
|
43.1
|
1.0
|
CD
|
A:LYS361
|
4.5
|
57.5
|
1.0
|
CZ2
|
A:TRP282
|
4.5
|
42.6
|
1.0
|
C16
|
A:1AZ501
|
4.6
|
49.0
|
1.0
|
CZ
|
A:PHE232
|
4.7
|
33.5
|
1.0
|
O
|
A:LYS361
|
4.9
|
56.0
|
1.0
|
CG
|
A:LYS361
|
4.9
|
57.5
|
1.0
|
|
Chlorine binding site 2 out
of 36 in 2wgs
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Chlorine Binding Sites List in 2wgs
Chlorine binding site 2 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl501
b:49.9
occ:1.00
|
CL2
|
A:1AZ501
|
0.0
|
49.9
|
1.0
|
C18
|
A:1AZ501
|
1.8
|
48.5
|
1.0
|
C1
|
A:1AZ501
|
2.7
|
48.7
|
1.0
|
C17
|
A:1AZ501
|
2.8
|
48.6
|
1.0
|
CL1
|
A:1AZ501
|
3.1
|
49.7
|
1.0
|
CH2
|
A:TRP282
|
3.7
|
43.1
|
1.0
|
C2
|
A:1AZ501
|
4.0
|
48.5
|
1.0
|
CZ2
|
A:TRP282
|
4.0
|
42.6
|
1.0
|
C16
|
A:1AZ501
|
4.0
|
49.0
|
1.0
|
CZ3
|
A:TRP282
|
4.1
|
43.0
|
1.0
|
CZ
|
A:PHE232
|
4.4
|
33.5
|
1.0
|
C3
|
A:1AZ501
|
4.5
|
48.7
|
1.0
|
CE2
|
A:TRP282
|
4.6
|
42.6
|
1.0
|
CE1
|
A:PHE232
|
4.7
|
33.6
|
1.0
|
CE3
|
A:TRP282
|
4.7
|
43.0
|
1.0
|
OH
|
A:TYR129
|
4.8
|
36.8
|
1.0
|
CZ
|
A:TYR129
|
4.9
|
37.0
|
1.0
|
CE2
|
A:TYR129
|
4.9
|
36.9
|
1.0
|
CD2
|
A:TRP282
|
4.9
|
42.5
|
1.0
|
|
Chlorine binding site 3 out
of 36 in 2wgs
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Chlorine Binding Sites List in 2wgs
Chlorine binding site 3 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl502
b:57.9
occ:1.00
|
N
|
A:SER424
|
3.2
|
39.1
|
1.0
|
O
|
A:HOH2117
|
3.2
|
44.3
|
1.0
|
N
|
A:LEU423
|
3.5
|
42.4
|
1.0
|
OG
|
A:SER424
|
3.7
|
37.9
|
1.0
|
CB
|
A:LEU423
|
3.7
|
40.4
|
1.0
|
CB
|
A:SER424
|
3.7
|
38.3
|
1.0
|
CA
|
A:LEU423
|
3.9
|
40.6
|
1.0
|
CG1
|
A:ILE460
|
4.0
|
35.9
|
1.0
|
C
|
A:LEU423
|
4.0
|
40.1
|
1.0
|
OE1
|
A:GLN422
|
4.0
|
55.9
|
1.0
|
CG2
|
A:ILE460
|
4.0
|
35.5
|
1.0
|
CA
|
A:SER424
|
4.0
|
38.4
|
1.0
|
CB
|
A:GLN422
|
4.2
|
47.0
|
1.0
|
C
|
A:GLN422
|
4.3
|
44.5
|
1.0
|
CG2
|
A:VAL324
|
4.4
|
27.2
|
1.0
|
CB
|
A:ILE460
|
4.5
|
36.9
|
1.0
|
CA
|
A:GLN422
|
4.6
|
46.4
|
1.0
|
CG1
|
A:VAL324
|
4.6
|
27.3
|
1.0
|
CG
|
A:LEU423
|
4.8
|
40.1
|
1.0
|
CA
|
A:ILE460
|
4.8
|
37.0
|
1.0
|
CD1
|
A:ILE460
|
4.8
|
35.1
|
1.0
|
CD
|
A:GLN422
|
4.9
|
53.9
|
1.0
|
CB
|
A:VAL324
|
5.0
|
28.6
|
1.0
|
|
Chlorine binding site 4 out
of 36 in 2wgs
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Chlorine Binding Sites List in 2wgs
Chlorine binding site 4 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl501
b:50.2
occ:1.00
|
CL1
|
B:1AZ501
|
0.0
|
50.2
|
1.0
|
C1
|
B:1AZ501
|
1.8
|
48.7
|
1.0
|
C18
|
B:1AZ501
|
2.7
|
48.5
|
1.0
|
C2
|
B:1AZ501
|
2.7
|
48.4
|
1.0
|
CL2
|
B:1AZ501
|
3.1
|
49.7
|
1.0
|
C3
|
B:1AZ501
|
4.0
|
48.7
|
1.0
|
C17
|
B:1AZ501
|
4.0
|
48.6
|
1.0
|
CB
|
B:LYS361
|
4.1
|
57.1
|
1.0
|
CH2
|
B:TRP282
|
4.4
|
43.0
|
1.0
|
CD
|
B:LYS361
|
4.5
|
57.5
|
1.0
|
CZ2
|
B:TRP282
|
4.5
|
42.6
|
1.0
|
C16
|
B:1AZ501
|
4.5
|
48.9
|
1.0
|
CZ
|
B:PHE232
|
4.7
|
33.5
|
1.0
|
O
|
B:LYS361
|
4.8
|
55.9
|
1.0
|
CG
|
B:LYS361
|
4.9
|
57.4
|
1.0
|
C
|
B:LYS361
|
5.0
|
56.1
|
1.0
|
|
Chlorine binding site 5 out
of 36 in 2wgs
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Chlorine Binding Sites List in 2wgs
Chlorine binding site 5 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl501
b:49.7
occ:1.00
|
CL2
|
B:1AZ501
|
0.0
|
49.7
|
1.0
|
C18
|
B:1AZ501
|
1.8
|
48.5
|
1.0
|
C1
|
B:1AZ501
|
2.7
|
48.7
|
1.0
|
C17
|
B:1AZ501
|
2.8
|
48.6
|
1.0
|
CL1
|
B:1AZ501
|
3.1
|
50.2
|
1.0
|
CH2
|
B:TRP282
|
3.8
|
43.0
|
1.0
|
C2
|
B:1AZ501
|
4.0
|
48.4
|
1.0
|
C16
|
B:1AZ501
|
4.0
|
48.9
|
1.0
|
CZ2
|
B:TRP282
|
4.1
|
42.6
|
1.0
|
CZ3
|
B:TRP282
|
4.2
|
42.9
|
1.0
|
CZ
|
B:PHE232
|
4.4
|
33.5
|
1.0
|
C3
|
B:1AZ501
|
4.5
|
48.7
|
1.0
|
CE1
|
B:PHE232
|
4.6
|
33.7
|
1.0
|
CE2
|
B:TRP282
|
4.7
|
42.5
|
1.0
|
CE3
|
B:TRP282
|
4.8
|
42.9
|
1.0
|
OH
|
B:TYR129
|
4.9
|
36.5
|
1.0
|
CE2
|
B:TYR129
|
4.9
|
36.8
|
1.0
|
CZ
|
B:TYR129
|
4.9
|
36.9
|
1.0
|
CD2
|
B:TRP282
|
5.0
|
42.6
|
1.0
|
|
Chlorine binding site 6 out
of 36 in 2wgs
Go back to
Chlorine Binding Sites List in 2wgs
Chlorine binding site 6 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl502
b:57.8
occ:1.00
|
O
|
B:HOH2121
|
3.2
|
44.2
|
1.0
|
N
|
B:SER424
|
3.2
|
39.1
|
1.0
|
N
|
B:LEU423
|
3.5
|
42.4
|
1.0
|
OG
|
B:SER424
|
3.7
|
37.8
|
1.0
|
CB
|
B:LEU423
|
3.8
|
40.4
|
1.0
|
CB
|
B:SER424
|
3.8
|
38.3
|
1.0
|
OE1
|
B:GLN422
|
3.8
|
56.0
|
1.0
|
CA
|
B:LEU423
|
3.9
|
40.6
|
1.0
|
CB
|
B:GLN422
|
4.0
|
46.9
|
1.0
|
C
|
B:LEU423
|
4.0
|
40.0
|
1.0
|
CA
|
B:SER424
|
4.1
|
38.5
|
1.0
|
CG1
|
B:ILE460
|
4.1
|
36.0
|
1.0
|
C
|
B:GLN422
|
4.2
|
44.5
|
1.0
|
CG2
|
B:ILE460
|
4.2
|
35.5
|
1.0
|
CA
|
B:GLN422
|
4.5
|
46.3
|
1.0
|
CG2
|
B:VAL324
|
4.6
|
27.0
|
1.0
|
CG1
|
B:VAL324
|
4.6
|
27.4
|
1.0
|
CB
|
B:ILE460
|
4.7
|
36.9
|
1.0
|
CD
|
B:GLN422
|
4.8
|
53.9
|
1.0
|
CG
|
B:LEU423
|
4.9
|
40.1
|
1.0
|
CG
|
B:GLN422
|
4.9
|
49.6
|
1.0
|
CD1
|
B:ILE460
|
5.0
|
35.1
|
1.0
|
CA
|
B:ILE460
|
5.0
|
37.1
|
1.0
|
|
Chlorine binding site 7 out
of 36 in 2wgs
Go back to
Chlorine Binding Sites List in 2wgs
Chlorine binding site 7 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl501
b:50.0
occ:1.00
|
CL1
|
C:1AZ501
|
0.0
|
50.0
|
1.0
|
C1
|
C:1AZ501
|
1.8
|
48.6
|
1.0
|
C2
|
C:1AZ501
|
2.7
|
48.5
|
1.0
|
C18
|
C:1AZ501
|
2.8
|
48.5
|
1.0
|
CL2
|
C:1AZ501
|
3.1
|
50.0
|
1.0
|
C3
|
C:1AZ501
|
4.0
|
48.7
|
1.0
|
C17
|
C:1AZ501
|
4.1
|
48.6
|
1.0
|
CB
|
C:LYS361
|
4.1
|
57.2
|
1.0
|
CH2
|
C:TRP282
|
4.4
|
43.1
|
1.0
|
CD
|
C:LYS361
|
4.5
|
57.6
|
1.0
|
CZ2
|
C:TRP282
|
4.5
|
42.7
|
1.0
|
C16
|
C:1AZ501
|
4.6
|
49.0
|
1.0
|
CZ
|
C:PHE232
|
4.7
|
33.6
|
1.0
|
O
|
C:LYS361
|
4.8
|
56.0
|
1.0
|
CG
|
C:LYS361
|
4.8
|
57.5
|
1.0
|
C
|
C:LYS361
|
5.0
|
56.1
|
1.0
|
|
Chlorine binding site 8 out
of 36 in 2wgs
Go back to
Chlorine Binding Sites List in 2wgs
Chlorine binding site 8 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl501
b:50.0
occ:1.00
|
CL2
|
C:1AZ501
|
0.0
|
50.0
|
1.0
|
C18
|
C:1AZ501
|
1.8
|
48.5
|
1.0
|
C1
|
C:1AZ501
|
2.7
|
48.6
|
1.0
|
C17
|
C:1AZ501
|
2.8
|
48.6
|
1.0
|
CL1
|
C:1AZ501
|
3.1
|
50.0
|
1.0
|
CH2
|
C:TRP282
|
3.8
|
43.1
|
1.0
|
C2
|
C:1AZ501
|
4.0
|
48.5
|
1.0
|
C16
|
C:1AZ501
|
4.0
|
49.0
|
1.0
|
CZ2
|
C:TRP282
|
4.1
|
42.7
|
1.0
|
CZ3
|
C:TRP282
|
4.2
|
43.1
|
1.0
|
CZ
|
C:PHE232
|
4.4
|
33.6
|
1.0
|
C3
|
C:1AZ501
|
4.5
|
48.7
|
1.0
|
CE1
|
C:PHE232
|
4.6
|
33.6
|
1.0
|
CE2
|
C:TRP282
|
4.7
|
42.5
|
1.0
|
CE3
|
C:TRP282
|
4.8
|
43.1
|
1.0
|
OH
|
C:TYR129
|
4.8
|
36.8
|
1.0
|
CZ
|
C:TYR129
|
4.9
|
37.0
|
1.0
|
CE2
|
C:TYR129
|
4.9
|
36.6
|
1.0
|
CD2
|
C:TRP282
|
5.0
|
42.5
|
1.0
|
|
Chlorine binding site 9 out
of 36 in 2wgs
Go back to
Chlorine Binding Sites List in 2wgs
Chlorine binding site 9 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl502
b:57.8
occ:1.00
|
O
|
C:HOH2120
|
3.2
|
44.1
|
1.0
|
N
|
C:SER424
|
3.2
|
39.1
|
1.0
|
N
|
C:LEU423
|
3.5
|
42.4
|
1.0
|
OG
|
C:SER424
|
3.8
|
37.9
|
1.0
|
CB
|
C:SER424
|
3.8
|
38.3
|
1.0
|
CB
|
C:LEU423
|
3.8
|
40.4
|
1.0
|
OE1
|
C:GLN422
|
3.8
|
56.0
|
1.0
|
CA
|
C:LEU423
|
3.9
|
40.6
|
1.0
|
CB
|
C:GLN422
|
4.0
|
46.9
|
1.0
|
C
|
C:LEU423
|
4.0
|
40.1
|
1.0
|
CA
|
C:SER424
|
4.1
|
38.5
|
1.0
|
CG1
|
C:ILE460
|
4.1
|
35.9
|
1.0
|
CG2
|
C:ILE460
|
4.2
|
35.4
|
1.0
|
C
|
C:GLN422
|
4.2
|
44.5
|
1.0
|
CA
|
C:GLN422
|
4.5
|
46.3
|
1.0
|
CG2
|
C:VAL324
|
4.6
|
27.1
|
1.0
|
CB
|
C:ILE460
|
4.6
|
36.8
|
1.0
|
CG1
|
C:VAL324
|
4.6
|
27.4
|
1.0
|
CD
|
C:GLN422
|
4.8
|
53.9
|
1.0
|
CG
|
C:GLN422
|
4.9
|
49.6
|
1.0
|
CG
|
C:LEU423
|
4.9
|
40.0
|
1.0
|
CA
|
C:ILE460
|
5.0
|
37.1
|
1.0
|
CD1
|
C:ILE460
|
5.0
|
35.1
|
1.0
|
|
Chlorine binding site 10 out
of 36 in 2wgs
Go back to
Chlorine Binding Sites List in 2wgs
Chlorine binding site 10 out
of 36 in the Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor.
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of Mycobacterium Tuberculosis Glutamine Synthetase in Complex with A Purine Analogue Inhibitor. within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl501
b:49.7
occ:1.00
|
CL1
|
D:1AZ501
|
0.0
|
49.7
|
1.0
|
C1
|
D:1AZ501
|
1.8
|
48.6
|
1.0
|
C18
|
D:1AZ501
|
2.8
|
48.5
|
1.0
|
C2
|
D:1AZ501
|
2.8
|
48.5
|
1.0
|
CL2
|
D:1AZ501
|
3.1
|
49.8
|
1.0
|
C3
|
D:1AZ501
|
4.1
|
48.8
|
1.0
|
CB
|
D:LYS361
|
4.1
|
57.1
|
1.0
|
C17
|
D:1AZ501
|
4.1
|
48.4
|
1.0
|
CH2
|
D:TRP282
|
4.4
|
43.0
|
1.0
|
CD
|
D:LYS361
|
4.4
|
57.5
|
1.0
|
CZ2
|
D:TRP282
|
4.5
|
42.5
|
1.0
|
C16
|
D:1AZ501
|
4.6
|
48.9
|
1.0
|
CZ
|
D:PHE232
|
4.8
|
33.6
|
1.0
|
O
|
D:LYS361
|
4.8
|
55.9
|
1.0
|
CG
|
D:LYS361
|
4.8
|
57.5
|
1.0
|
C
|
D:LYS361
|
5.0
|
56.1
|
1.0
|
|
Reference:
M.T.Nilsson,
W.W.Krajewski,
S.Yellagunda,
S.Prabhumurthy,
G.N.Chamarahally,
C.Siddamadappa,
B.R.Srinivasa,
S.Yahiaoui,
M.Larhed,
A.Karlen,
T.A.Jones,
S.L.Mowbray.
Structural Basis For the Inhibition of Mycobacterium Tuberculosis Glutamine Synthetase By Novel Atp-Competitive Inhibitors. J.Mol.Biol. V. 393 504 2009.
ISSN: ISSN 0022-2836
PubMed: 19695264
DOI: 10.1016/J.JMB.2009.08.028
Page generated: Sat Jul 20 12:49:06 2024
|