Chlorine in PDB 2why: Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Protein crystallography data
The structure of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin, PDB code: 2why
was solved by
F.Peuckert,
M.Miethke,
A.G.Albrecht,
L.-O.Essen,
M.A.Marahiel,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.51 /
1.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
39.530,
63.140,
55.530,
90.00,
110.44,
90.00
|
R / Rfree (%)
|
15.749 /
19.12
|
Other elements in 2why:
The structure of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin also contains other interesting chemical elements:
Chlorine Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Chlorine atom in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
(pdb code 2why). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 11 binding sites of Chlorine where determined in the
Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin, PDB code: 2why:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Chlorine binding site 1 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 1 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1302
b:66.1
occ:1.00
|
OE1
|
A:GLU208
|
3.4
|
32.6
|
1.0
|
NZ
|
A:LYS173
|
3.5
|
29.0
|
1.0
|
N
|
A:ASN207
|
3.9
|
28.1
|
1.0
|
CE
|
A:LYS173
|
4.0
|
30.8
|
1.0
|
ND2
|
A:ASN207
|
4.1
|
30.6
|
0.5
|
CD
|
A:GLU208
|
4.2
|
33.4
|
1.0
|
OE2
|
A:GLU208
|
4.3
|
34.4
|
0.5
|
CB
|
A:ASN207
|
4.4
|
29.1
|
1.0
|
CB
|
A:PRO206
|
4.4
|
26.8
|
1.0
|
O
|
A:HOH2100
|
4.4
|
41.6
|
1.0
|
CG
|
A:MET226
|
4.4
|
25.6
|
1.0
|
CA
|
A:PRO206
|
4.5
|
26.7
|
1.0
|
CG
|
A:ASN207
|
4.6
|
30.1
|
1.0
|
C
|
A:PRO206
|
4.7
|
27.3
|
1.0
|
CA
|
A:ASN207
|
4.8
|
28.2
|
1.0
|
CD
|
A:LYS173
|
4.8
|
27.3
|
1.0
|
CA
|
A:MET226
|
4.9
|
24.0
|
1.0
|
CB
|
A:MET226
|
5.0
|
24.1
|
1.0
|
|
Chlorine binding site 2 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 2 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1303
b:60.5
occ:1.00
|
N
|
A:THR120
|
3.1
|
30.6
|
1.0
|
O
|
A:THR120
|
3.7
|
30.6
|
1.0
|
CA
|
A:THR119
|
3.9
|
31.4
|
1.0
|
CA
|
A:THR120
|
4.0
|
30.4
|
1.0
|
C
|
A:THR119
|
4.0
|
30.9
|
1.0
|
CB
|
A:THR120
|
4.1
|
30.6
|
1.0
|
O
|
A:GLY118
|
4.2
|
32.1
|
1.0
|
C
|
A:THR120
|
4.2
|
30.3
|
1.0
|
O
|
A:HOH2055
|
4.3
|
57.1
|
1.0
|
CB
|
A:SER115
|
4.3
|
31.0
|
1.0
|
CG2
|
A:THR119
|
4.4
|
31.4
|
1.0
|
OG1
|
A:THR120
|
4.5
|
30.2
|
1.0
|
CB
|
A:THR119
|
4.8
|
31.4
|
1.0
|
N
|
A:THR119
|
4.8
|
31.6
|
1.0
|
C
|
A:GLY118
|
4.9
|
32.0
|
1.0
|
|
Chlorine binding site 3 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 3 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1304
b:65.4
occ:1.00
|
O
|
A:HOH2104
|
2.9
|
36.3
|
1.0
|
N
|
A:ASP237
|
3.2
|
27.0
|
1.0
|
OD2
|
A:ASP237
|
3.4
|
33.0
|
0.5
|
CG
|
A:ASP237
|
3.7
|
30.2
|
0.5
|
CB
|
A:ASP237
|
3.8
|
29.2
|
1.0
|
CA
|
A:SER236
|
3.8
|
25.0
|
1.0
|
C
|
A:SER236
|
4.0
|
25.7
|
1.0
|
CA
|
A:ASP237
|
4.1
|
28.3
|
1.0
|
CG
|
A:PRO274
|
4.1
|
25.2
|
1.0
|
O
|
A:HOH2126
|
4.2
|
29.3
|
1.0
|
O
|
A:PHE235
|
4.3
|
23.4
|
1.0
|
OG
|
A:SER236
|
4.3
|
26.8
|
1.0
|
OD1
|
A:ASP237
|
4.6
|
31.1
|
0.5
|
CB
|
A:SER236
|
4.6
|
25.3
|
1.0
|
N
|
A:ASP238
|
4.7
|
28.5
|
1.0
|
O
|
A:HOH2125
|
4.8
|
49.1
|
1.0
|
N
|
A:SER236
|
4.9
|
24.4
|
1.0
|
|
Chlorine binding site 4 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 4 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1305
b:65.5
occ:1.00
|
O
|
A:HOH2132
|
2.7
|
30.9
|
1.0
|
O
|
A:HOH2082
|
3.0
|
57.4
|
1.0
|
OD1
|
A:ASP200
|
3.6
|
30.9
|
1.0
|
NE1
|
A:TRP130
|
3.7
|
26.8
|
1.0
|
NZ
|
A:LYS284
|
3.9
|
25.6
|
1.0
|
CD1
|
A:TRP130
|
4.1
|
26.8
|
1.0
|
CG
|
A:ASP200
|
4.4
|
27.9
|
1.0
|
OD2
|
A:ASP200
|
4.5
|
27.7
|
1.0
|
CE
|
A:LYS284
|
4.5
|
25.5
|
1.0
|
CA
|
A:SER128
|
4.5
|
27.1
|
1.0
|
CB
|
A:SER195
|
4.6
|
24.8
|
1.0
|
O
|
A:SER195
|
4.7
|
25.2
|
1.0
|
OG
|
A:SER195
|
4.8
|
27.4
|
1.0
|
CE2
|
A:TRP130
|
4.9
|
25.5
|
1.0
|
O
|
A:SER127
|
4.9
|
27.1
|
1.0
|
CB
|
A:SER128
|
5.0
|
27.1
|
1.0
|
|
Chlorine binding site 5 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 5 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1306
b:79.5
occ:1.00
|
O
|
A:HOH2067
|
2.8
|
55.3
|
1.0
|
OD2
|
A:ASP157
|
2.9
|
44.4
|
1.0
|
CG
|
A:ASP157
|
3.4
|
39.8
|
1.0
|
CB
|
A:ASP153
|
3.5
|
34.9
|
1.0
|
O
|
A:ASP153
|
3.6
|
35.1
|
1.0
|
OD1
|
A:ASP157
|
3.7
|
42.5
|
1.0
|
C
|
A:ASP153
|
3.8
|
35.5
|
1.0
|
CG2
|
A:VAL285
|
4.2
|
20.6
|
0.5
|
CA
|
A:ASP153
|
4.2
|
35.0
|
1.0
|
N
|
A:TYR154
|
4.2
|
35.6
|
1.0
|
CB
|
A:ASP157
|
4.5
|
37.1
|
1.0
|
CG
|
A:ASP153
|
4.6
|
34.8
|
0.5
|
CA
|
A:TYR154
|
4.7
|
35.7
|
1.0
|
CG1
|
A:VAL285
|
4.7
|
23.0
|
0.5
|
OD2
|
A:ASP153
|
4.9
|
35.3
|
0.5
|
|
Chlorine binding site 6 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 6 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1307
b:57.3
occ:1.00
|
N
|
A:LEU220
|
3.0
|
22.5
|
0.5
|
N
|
A:LEU220
|
3.0
|
22.7
|
0.5
|
OE1
|
A:GLU221
|
3.1
|
24.8
|
1.0
|
CA
|
A:SER219
|
3.6
|
22.8
|
1.0
|
CB
|
A:LEU220
|
3.6
|
23.1
|
0.5
|
CB
|
A:LEU220
|
3.7
|
23.4
|
0.5
|
C
|
A:SER219
|
3.8
|
22.7
|
1.0
|
CB
|
A:SER219
|
3.8
|
22.7
|
1.0
|
CA
|
A:LEU220
|
3.9
|
23.1
|
0.5
|
CA
|
A:LEU220
|
3.9
|
22.9
|
0.5
|
O
|
A:HOH2072
|
4.0
|
75.5
|
1.0
|
CD
|
A:GLU221
|
4.1
|
27.3
|
1.0
|
CG
|
A:LEU220
|
4.1
|
24.1
|
0.5
|
O
|
A:HOH2096
|
4.2
|
30.0
|
1.0
|
OE2
|
A:GLU221
|
4.4
|
32.0
|
1.0
|
N
|
A:GLU221
|
4.5
|
22.4
|
1.0
|
CL
|
A:CL1309
|
4.6
|
95.3
|
1.0
|
CD1
|
A:LEU220
|
4.6
|
24.6
|
0.5
|
C
|
A:LEU220
|
4.7
|
22.7
|
0.5
|
C
|
A:LEU220
|
4.8
|
22.8
|
0.5
|
O
|
A:SER219
|
5.0
|
22.3
|
1.0
|
OG
|
A:SER219
|
5.0
|
22.4
|
1.0
|
N
|
A:SER219
|
5.0
|
23.4
|
1.0
|
|
Chlorine binding site 7 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 7 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 7 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1308
b:71.0
occ:1.00
|
C
|
A:SER64
|
3.8
|
33.9
|
1.0
|
O
|
A:SER64
|
3.8
|
34.2
|
1.0
|
N
|
A:GLY65
|
4.0
|
33.3
|
1.0
|
CA
|
A:GLY65
|
4.2
|
33.2
|
1.0
|
CA
|
A:SER64
|
4.3
|
34.1
|
1.0
|
CB
|
A:SER64
|
5.0
|
34.5
|
1.0
|
|
Chlorine binding site 8 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 8 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 8 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1309
b:95.3
occ:1.00
|
O
|
A:HOH2072
|
3.2
|
75.5
|
1.0
|
OD1
|
A:ASN183
|
3.8
|
30.5
|
1.0
|
O
|
A:GLY182
|
4.4
|
27.8
|
1.0
|
CL
|
A:CL1307
|
4.6
|
57.3
|
1.0
|
O
|
A:HOH2052
|
4.6
|
71.4
|
1.0
|
|
Chlorine binding site 9 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 9 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 9 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1310
b:87.5
occ:1.00
|
O
|
A:HOH2124
|
2.8
|
52.2
|
1.0
|
ND2
|
A:ASN270
|
4.0
|
25.7
|
1.0
|
CD2
|
A:LEU247
|
4.3
|
37.8
|
1.0
|
CD1
|
A:PHE235
|
4.4
|
27.5
|
1.0
|
CG1
|
A:VAL269
|
4.6
|
24.1
|
1.0
|
O
|
A:PHE235
|
5.0
|
23.4
|
1.0
|
CE1
|
A:PHE235
|
5.0
|
28.1
|
1.0
|
|
Chlorine binding site 10 out
of 11 in 2why
Go back to
Chlorine Binding Sites List in 2why
Chlorine binding site 10 out
of 11 in the Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 10 of Crystal Structure of the Triscatecholate Siderophore Binding Protein Feua From Bacillus Subtilis Complexed with Ferri-Bacillibactin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1311
b:67.6
occ:1.00
|
CA
|
A:ALA211
|
4.0
|
28.8
|
1.0
|
O
|
A:LYS210
|
4.1
|
30.5
|
1.0
|
CB
|
A:ALA211
|
4.3
|
29.3
|
1.0
|
NZ
|
A:LYS213
|
4.4
|
36.2
|
1.0
|
N
|
A:ALA211
|
4.4
|
28.9
|
1.0
|
C
|
A:LYS210
|
4.4
|
29.4
|
1.0
|
|
Reference:
F.Peuckert,
M.Miethke,
A.G.Albrecht,
L.-O.Essen,
M.A.Marahiel.
Structural Basis and Stereochemistry of Triscatecholate Siderophore Binding By Feua. Angew.Chem.Int.Ed.Engl. V. 48 7924 2009.
ISSN: ISSN 1433-7851
PubMed: 19746494
DOI: 10.1002/ANIE.200902495
Page generated: Sat Jul 20 12:51:11 2024
|