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Chlorine in PDB 2woc: Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum

Enzymatic activity of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum

All present enzymatic activity of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum:
3.2.2.24;

Protein crystallography data

The structure of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum, PDB code: 2woc was solved by C.L.Berthold, H.Wang, S.Nordlund, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.20
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 44.771, 47.537, 95.212, 80.84, 86.56, 85.83
R / Rfree (%) 17.425 / 24.016

Other elements in 2woc:

The structure of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum also contains other interesting chemical elements:

Manganese (Mn) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum (pdb code 2woc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum, PDB code: 2woc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2woc

Go back to Chlorine Binding Sites List in 2woc
Chlorine binding site 1 out of 2 in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:21.7
occ:1.00
 N A:MET45 3.2 25.4 1.0
CD1 A:TRP268 3.7 25.3 1.0
CA A:LYS44 3.8 25.5 1.0
CB A:MET45 3.9 25.2 1.0
CB A:LYS44 3.9 25.3 1.0
C A:LYS44 4.0 25.4 1.0
CE A:LYS271 4.0 29.7 1.0
CG A:MET45 4.1 25.5 1.0
NZ A:LYS271 4.1 29.6 1.0
O2 A:GOL502 4.1 52.4 1.0
NE1 A:TRP268 4.1 25.4 1.0
CA A:MET45 4.2 25.6 1.0
CG A:LYS271 4.3 25.5 1.0
O A:GLY267 4.4 24.9 1.0
C A:GLY267 4.5 24.7 1.0
N A:TRP268 4.7 24.8 1.0
CE A:LYS44 4.7 30.9 1.0
CD A:LYS271 4.8 28.0 1.0
CD A:LYS44 4.8 29.4 1.0
C2 A:GOL502 4.8 52.3 1.0
O A:MET45 4.8 25.8 1.0
O A:ARG43 4.8 25.2 1.0
C A:MET45 4.9 25.7 1.0
CA A:TRP268 4.9 24.7 1.0
O1 A:GOL502 4.9 50.8 1.0
CG A:LYS44 4.9 27.1 1.0
CG A:TRP268 4.9 25.6 1.0

Chlorine binding site 2 out of 2 in 2woc

Go back to Chlorine Binding Sites List in 2woc
Chlorine binding site 2 out of 2 in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:22.8
occ:1.00
 N B:MET45 3.1 25.4 1.0
O1 B:GOL502 3.3 48.3 1.0
NZ B:LYS271 3.5 32.6 1.0
CD1 B:TRP268 3.7 23.9 1.0
CB B:MET45 3.8 26.2 1.0
CA B:LYS44 3.8 25.5 1.0
CG B:MET45 3.9 27.4 1.0
C B:LYS44 3.9 25.4 1.0
CA B:MET45 4.0 25.8 1.0
CB B:LYS44 4.0 25.6 1.0
CG B:LYS271 4.1 25.6 1.0
NE1 B:TRP268 4.2 23.2 1.0
C1 B:GOL502 4.2 47.6 1.0
C2 B:GOL502 4.3 47.6 1.0
O B:GLY267 4.4 24.8 1.0
C B:GLY267 4.5 24.7 1.0
O2 B:GOL502 4.6 47.5 1.0
O B:MET45 4.7 25.6 1.0
CE B:LYS271 4.7 29.9 1.0
CG B:LYS44 4.7 26.5 1.0
C B:MET45 4.7 25.7 1.0
N B:TRP268 4.8 24.6 1.0
CA B:TRP268 4.8 24.6 1.0
O B:ARG43 4.9 25.3 1.0
CG B:TRP268 5.0 24.0 1.0

Reference:

C.L.Berthold, H.Wang, S.Nordlund, M.Hogbom. Mechanism of Adp-Ribosylation Removal Revealed By the Structure and Ligand Complexes of the Dimanganese Mono-Adp-Ribosylhydrolase Drag. Proc.Natl.Acad.Sci.Usa V. 106 14247 2009.
ISSN: ISSN 0027-8424
PubMed: 19706507
DOI: 10.1073/PNAS.0905906106
Page generated: Sat Jul 20 13:04:29 2024

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