Atomistry » Chlorine » PDB 2wjp-2wpq » 2woc
Atomistry »
  Chlorine »
    PDB 2wjp-2wpq »
      2woc »

Chlorine in PDB 2woc: Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum

Enzymatic activity of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum

All present enzymatic activity of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum:
3.2.2.24;

Protein crystallography data

The structure of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum, PDB code: 2woc was solved by C.L.Berthold, H.Wang, S.Nordlund, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 2.20
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 44.771, 47.537, 95.212, 80.84, 86.56, 85.83
R / Rfree (%) 17.425 / 24.016

Other elements in 2woc:

The structure of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum also contains other interesting chemical elements:

Manganese (Mn) 6 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum (pdb code 2woc). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum, PDB code: 2woc:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2woc

Go back to Chlorine Binding Sites List in 2woc
Chlorine binding site 1 out of 2 in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl501

b:21.7
occ:1.00
 N A:MET45 3.2 25.4 1.0
CD1 A:TRP268 3.7 25.3 1.0
CA A:LYS44 3.8 25.5 1.0
CB A:MET45 3.9 25.2 1.0
CB A:LYS44 3.9 25.3 1.0
C A:LYS44 4.0 25.4 1.0
CE A:LYS271 4.0 29.7 1.0
CG A:MET45 4.1 25.5 1.0
NZ A:LYS271 4.1 29.6 1.0
O2 A:GOL502 4.1 52.4 1.0
NE1 A:TRP268 4.1 25.4 1.0
CA A:MET45 4.2 25.6 1.0
CG A:LYS271 4.3 25.5 1.0
O A:GLY267 4.4 24.9 1.0
C A:GLY267 4.5 24.7 1.0
N A:TRP268 4.7 24.8 1.0
CE A:LYS44 4.7 30.9 1.0
CD A:LYS271 4.8 28.0 1.0
CD A:LYS44 4.8 29.4 1.0
C2 A:GOL502 4.8 52.3 1.0
O A:MET45 4.8 25.8 1.0
O A:ARG43 4.8 25.2 1.0
C A:MET45 4.9 25.7 1.0
CA A:TRP268 4.9 24.7 1.0
O1 A:GOL502 4.9 50.8 1.0
CG A:LYS44 4.9 27.1 1.0
CG A:TRP268 4.9 25.6 1.0

Chlorine binding site 2 out of 2 in 2woc

Go back to Chlorine Binding Sites List in 2woc
Chlorine binding site 2 out of 2 in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl501

b:22.8
occ:1.00
 N B:MET45 3.1 25.4 1.0
O1 B:GOL502 3.3 48.3 1.0
NZ B:LYS271 3.5 32.6 1.0
CD1 B:TRP268 3.7 23.9 1.0
CB B:MET45 3.8 26.2 1.0
CA B:LYS44 3.8 25.5 1.0
CG B:MET45 3.9 27.4 1.0
C B:LYS44 3.9 25.4 1.0
CA B:MET45 4.0 25.8 1.0
CB B:LYS44 4.0 25.6 1.0
CG B:LYS271 4.1 25.6 1.0
NE1 B:TRP268 4.2 23.2 1.0
C1 B:GOL502 4.2 47.6 1.0
C2 B:GOL502 4.3 47.6 1.0
O B:GLY267 4.4 24.8 1.0
C B:GLY267 4.5 24.7 1.0
O2 B:GOL502 4.6 47.5 1.0
O B:MET45 4.7 25.6 1.0
CE B:LYS271 4.7 29.9 1.0
CG B:LYS44 4.7 26.5 1.0
C B:MET45 4.7 25.7 1.0
N B:TRP268 4.8 24.6 1.0
CA B:TRP268 4.8 24.6 1.0
O B:ARG43 4.9 25.3 1.0
CG B:TRP268 5.0 24.0 1.0

Reference:

C.L.Berthold, H.Wang, S.Nordlund, M.Hogbom. Mechanism of Adp-Ribosylation Removal Revealed By the Structure and Ligand Complexes of the Dimanganese Mono-Adp-Ribosylhydrolase Drag. Proc.Natl.Acad.Sci.Usa V. 106 14247 2009.
ISSN: ISSN 0027-8424
PubMed: 19706507
DOI: 10.1073/PNAS.0905906106
Page generated: Sat Jul 20 13:04:29 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy