Chlorine in PDB 2wod: Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine

Enzymatic activity of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine

All present enzymatic activity of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine:
3.2.2.24;

Protein crystallography data

The structure of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine, PDB code: 2wod was solved by C.L.Berthold, H.Wang, S.Nordlund, M.Hogbom, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

*Resolution Low / High (Å)*	34.92 / 2.25
*Space group*	P 3₁ 2 1
*Cell size a, b, c (Å), α, β, γ (°)*	77.306, 77.306, 245.593, 90.00, 90.00, 120.00
*R / R_free (%)*	19.7 / 24.2

Other elements in 2wod:

The structure of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine also contains other interesting chemical elements:

Manganese

(Mn)

2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine (pdb code 2wod). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine, PDB code: 2wod:

Chlorine binding site 1 out of 1 in 2wod

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Chlorine Binding Sites List in 2wod

Chlorine binding site 1 out of 1 in the Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine

Mono view

Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of the Dinitrogenase Reductase-Activating Glycohydrolase (Drag) From Rhodospirillum Rubrum in Complex with Adp- Ribsoyllysine within 5.0Å range:

probe	atom	residue	distance (Å)	B	Occ
B:Cl500 b:38.3 occ:1.00	O1	B:GOL600	3.1	39.0	1.0
	N	B:MET45	3.1	43.9	1.0
	CD1	B:TRP268	3.6	39.5	1.0
	CA	B:LYS44	3.7	45.1	1.0
	CB	B:LYS44	3.9	45.3	1.0
	CB	B:MET45	3.9	43.1	1.0
	CG	B:MET45	3.9	43.4	1.0
	C	B:LYS44	3.9	44.4	1.0
	O	B:GLY267	4.0	42.0	1.0
	NE1	B:TRP268	4.0	39.5	1.0
	C1	B:GOL600	4.0	40.9	1.0
	CA	B:MET45	4.1	43.5	1.0
	CE	B:LYS44	4.1	48.1	1.0
	CG	B:LYS271	4.2	44.0	1.0
	C2	B:GOL600	4.2	41.2	1.0
	C	B:GLY267	4.4	41.3	1.0
	O2	B:GOL600	4.6	43.8	1.0
	CD	B:LYS271	4.7	45.7	1.0
	CG	B:LYS44	4.7	46.1	1.0
	CE	B:LYS271	4.7	46.1	1.0
	N	B:TRP268	4.7	41.7	1.0
	O	B:MET45	4.8	42.6	1.0
	C	B:MET45	4.8	43.0	1.0
	CA	B:TRP268	4.8	41.1	1.0
	CG	B:TRP268	4.8	39.8	1.0
	CD	B:LYS44	4.9	46.8	1.0
	O	B:ARG43	4.9	45.3	1.0

Reference:

C.L.Berthold, H.Wang, S.Nordlund, M.Hogbom. Mechanism of Adp-Ribosylation Removal Revealed By the Structure and Ligand Complexes of the Dimanganese Mono-Adp-Ribosylhydrolase Drag. Proc.Natl.Acad.Sci.Usa V. 106 14247 2009.
ISSN: ISSN 0027-8424
PubMed: 19706507
DOI: 10.1073/PNAS.0905906106

Page generated: Sat Jul 20 13:04:50 2024

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