Chlorine in PDB 2wpr: Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion)
Protein crystallography data
The structure of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion), PDB code: 2wpr
was solved by
M.D.Hartmann,
O.Ridderbusch,
A.N.Lupas,
B.Hernandez Alvarez,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.36 /
2.65
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
36.130,
62.530,
172.570,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
26.704 /
32.729
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion)
(pdb code 2wpr). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion), PDB code: 2wpr:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 2wpr
Go back to
Chlorine Binding Sites List in 2wpr
Chlorine binding site 1 out
of 4 in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1554
b:43.8
occ:1.00
|
ND2
|
C:ASN495
|
3.0
|
33.3
|
1.0
|
ND2
|
B:ASN495
|
3.1
|
33.4
|
1.0
|
ND2
|
A:ASN495
|
3.1
|
33.6
|
1.0
|
CB
|
C:ASN495
|
3.6
|
24.7
|
1.0
|
CB
|
A:ASN495
|
3.7
|
24.9
|
1.0
|
CB
|
B:ASN495
|
3.8
|
25.3
|
1.0
|
CG
|
C:ASN495
|
3.8
|
34.0
|
1.0
|
CG
|
A:ASN495
|
3.9
|
33.9
|
1.0
|
CG
|
B:ASN495
|
3.9
|
34.0
|
1.0
|
CG2
|
A:ILE492
|
4.3
|
28.1
|
1.0
|
CG1
|
C:ILE492
|
4.3
|
38.1
|
1.0
|
CA
|
C:ILE492
|
4.3
|
32.7
|
1.0
|
CG2
|
B:ILE492
|
4.4
|
28.3
|
1.0
|
CG1
|
A:ILE492
|
4.4
|
37.8
|
1.0
|
CG1
|
B:ILE492
|
4.4
|
38.2
|
1.0
|
CA
|
A:ILE492
|
4.4
|
32.7
|
1.0
|
CG2
|
C:ILE492
|
4.4
|
28.1
|
1.0
|
CA
|
B:ILE492
|
4.5
|
32.4
|
1.0
|
CB
|
A:ILE492
|
4.6
|
30.1
|
1.0
|
CB
|
C:ILE492
|
4.6
|
30.3
|
1.0
|
CB
|
B:ILE492
|
4.7
|
30.1
|
1.0
|
O
|
C:ILE492
|
4.8
|
30.0
|
1.0
|
O
|
A:ILE492
|
4.9
|
30.4
|
1.0
|
O
|
C:ASP491
|
5.0
|
29.5
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 2wpr
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Chlorine Binding Sites List in 2wpr
Chlorine binding site 2 out
of 4 in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1555
b:48.6
occ:1.00
|
ND2
|
A:ASN509
|
3.1
|
21.8
|
1.0
|
ND2
|
C:ASN509
|
3.3
|
20.8
|
1.0
|
ND2
|
B:ASN509
|
3.4
|
20.6
|
1.0
|
CB
|
A:ASN509
|
3.4
|
33.6
|
1.0
|
CB
|
B:ASN509
|
3.6
|
33.8
|
1.0
|
CB
|
C:ASN509
|
3.7
|
33.9
|
1.0
|
CG
|
A:ASN509
|
3.7
|
35.6
|
1.0
|
CG
|
C:ASN509
|
3.9
|
35.7
|
1.0
|
CG
|
B:ASN509
|
4.0
|
36.1
|
1.0
|
CA
|
A:ILE506
|
4.2
|
34.7
|
1.0
|
CA
|
B:ILE506
|
4.4
|
34.5
|
1.0
|
CA
|
C:ILE506
|
4.5
|
34.5
|
1.0
|
CG2
|
A:ILE506
|
4.5
|
30.9
|
1.0
|
CG1
|
A:ILE506
|
4.6
|
45.1
|
1.0
|
CG2
|
B:ILE506
|
4.7
|
31.0
|
1.0
|
CB
|
A:ILE506
|
4.7
|
38.6
|
1.0
|
CG1
|
B:ILE506
|
4.7
|
44.5
|
1.0
|
CG2
|
C:ILE506
|
4.8
|
31.1
|
1.0
|
CG1
|
C:ILE506
|
4.8
|
44.6
|
1.0
|
O
|
A:ILE506
|
4.8
|
33.3
|
1.0
|
CA
|
A:ASN509
|
4.8
|
31.9
|
1.0
|
CB
|
B:ILE506
|
4.8
|
38.3
|
1.0
|
O
|
A:ASP505
|
4.9
|
35.2
|
1.0
|
O
|
B:ILE506
|
4.9
|
32.5
|
1.0
|
CB
|
C:ILE506
|
4.9
|
38.5
|
1.0
|
OD1
|
A:ASN509
|
4.9
|
44.2
|
1.0
|
N
|
A:ILE506
|
5.0
|
33.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 2wpr
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Chlorine Binding Sites List in 2wpr
Chlorine binding site 3 out
of 4 in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1554
b:42.6
occ:1.00
|
ND2
|
C:ASN488
|
3.4
|
40.7
|
1.0
|
ND2
|
B:ASN488
|
3.4
|
40.2
|
1.0
|
ND2
|
A:ASN488
|
3.6
|
40.1
|
1.0
|
CB
|
C:ASN488
|
3.7
|
31.3
|
1.0
|
CB
|
B:ASN488
|
4.0
|
31.4
|
1.0
|
CB
|
A:ASN488
|
4.0
|
30.7
|
1.0
|
CG
|
C:ASN488
|
4.1
|
35.4
|
1.0
|
CA
|
C:VAL485
|
4.1
|
35.1
|
1.0
|
CG2
|
C:VAL485
|
4.2
|
33.9
|
1.0
|
CG
|
B:ASN488
|
4.2
|
35.0
|
1.0
|
CG2
|
A:VAL485
|
4.2
|
33.4
|
1.0
|
O
|
C:VAL485
|
4.3
|
41.9
|
1.0
|
CG
|
A:ASN488
|
4.3
|
35.2
|
1.0
|
CG2
|
B:VAL485
|
4.3
|
33.4
|
1.0
|
CA
|
A:VAL485
|
4.4
|
34.9
|
1.0
|
CG1
|
C:VAL485
|
4.4
|
34.4
|
1.0
|
CB
|
C:VAL485
|
4.5
|
32.3
|
1.0
|
CA
|
B:VAL485
|
4.5
|
34.8
|
1.0
|
CG1
|
A:VAL485
|
4.6
|
34.2
|
1.0
|
CB
|
A:VAL485
|
4.6
|
32.7
|
1.0
|
C
|
C:VAL485
|
4.7
|
37.5
|
1.0
|
CG1
|
B:VAL485
|
4.8
|
34.5
|
1.0
|
CB
|
B:VAL485
|
4.8
|
32.5
|
1.0
|
O
|
C:LYS484
|
4.8
|
42.6
|
1.0
|
O
|
A:VAL485
|
4.8
|
41.5
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 2wpr
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Chlorine Binding Sites List in 2wpr
Chlorine binding site 4 out
of 4 in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V1, Out-of-Register Fusion) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1555
b:57.5
occ:1.00
|
ND2
|
B:ASN502
|
3.1
|
26.0
|
1.0
|
ND2
|
A:ASN502
|
3.3
|
25.8
|
1.0
|
ND2
|
C:ASN502
|
3.4
|
25.7
|
1.0
|
CB
|
B:ASN502
|
3.6
|
27.2
|
1.0
|
CB
|
C:ASN502
|
3.6
|
27.3
|
1.0
|
CG
|
B:ASN502
|
3.8
|
37.7
|
1.0
|
CB
|
A:ASN502
|
3.9
|
27.1
|
1.0
|
CG
|
C:ASN502
|
4.0
|
37.6
|
1.0
|
CG
|
A:ASN502
|
4.1
|
37.7
|
1.0
|
CA
|
C:ILE499
|
4.2
|
31.2
|
1.0
|
CG1
|
C:ILE499
|
4.2
|
37.2
|
1.0
|
CG1
|
B:ILE499
|
4.3
|
37.5
|
1.0
|
CA
|
B:ILE499
|
4.4
|
30.8
|
1.0
|
CG1
|
A:ILE499
|
4.5
|
37.0
|
1.0
|
O
|
C:ILE499
|
4.6
|
30.9
|
1.0
|
CB
|
C:ILE499
|
4.6
|
31.5
|
1.0
|
CG2
|
C:ILE499
|
4.7
|
25.8
|
1.0
|
CA
|
A:ILE499
|
4.7
|
31.0
|
1.0
|
CG2
|
B:ILE499
|
4.7
|
26.1
|
1.0
|
CB
|
B:ILE499
|
4.8
|
31.4
|
1.0
|
O
|
B:ILE499
|
4.8
|
30.7
|
1.0
|
CG2
|
A:ILE499
|
4.9
|
26.4
|
1.0
|
O
|
C:SER498
|
4.9
|
36.0
|
1.0
|
OD1
|
B:ASN502
|
5.0
|
31.1
|
1.0
|
C
|
C:ILE499
|
5.0
|
29.5
|
1.0
|
CB
|
A:ILE499
|
5.0
|
31.8
|
1.0
|
|
Reference:
M.D.Hartmann,
O.Ridderbusch,
K.Zeth,
R.Albrecht,
O.Testa,
D.N.Woolfson,
G.Sauer,
S.Dunin-Horkawicz,
A.N.Lupas,
B.H.Alvarez.
A Coiled-Coil Motif That Sequesters Ions to the Hydrophobic Core. Proc.Natl.Acad.Sci.Usa V. 106 16950 2009.
ISSN: ISSN 0027-8424
PubMed: 19805097
DOI: 10.1073/PNAS.0907256106
Page generated: Sat Jul 20 13:12:44 2024
|