Chlorine in PDB 2wps: Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion)
Protein crystallography data
The structure of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion), PDB code: 2wps
was solved by
M.D.Hartmann,
O.Ridderbusch,
A.N.Lupas,
B.Hernandez Alvarez,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
35.83 /
2.60
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
36.660,
55.850,
168.950,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
23.786 /
32.443
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion)
(pdb code 2wps). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the
Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion), PDB code: 2wps:
Jump to Chlorine binding site number:
1;
2;
3;
4;
Chlorine binding site 1 out
of 4 in 2wps
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Chlorine Binding Sites List in 2wps
Chlorine binding site 1 out
of 4 in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1554
b:33.7
occ:1.00
|
ND2
|
A:ASN488
|
3.0
|
11.2
|
1.0
|
ND2
|
C:ASN488
|
3.1
|
11.4
|
1.0
|
ND2
|
B:ASN488
|
3.2
|
11.9
|
1.0
|
CB
|
A:ASN488
|
3.6
|
17.8
|
1.0
|
CB
|
B:ASN488
|
3.7
|
17.4
|
1.0
|
CG
|
A:ASN488
|
3.8
|
17.2
|
1.0
|
CB
|
C:ASN488
|
3.9
|
17.3
|
1.0
|
CG
|
B:ASN488
|
4.0
|
17.7
|
1.0
|
CG
|
C:ASN488
|
4.0
|
17.4
|
1.0
|
CG2
|
A:VAL485
|
4.2
|
10.2
|
1.0
|
CG2
|
B:VAL485
|
4.2
|
10.6
|
1.0
|
CG2
|
C:VAL485
|
4.2
|
10.1
|
1.0
|
CA
|
A:VAL485
|
4.3
|
21.0
|
1.0
|
CG1
|
A:VAL485
|
4.4
|
15.7
|
1.0
|
CG1
|
B:VAL485
|
4.4
|
16.0
|
1.0
|
CA
|
B:VAL485
|
4.4
|
21.1
|
1.0
|
CB
|
A:VAL485
|
4.5
|
19.0
|
1.0
|
CA
|
C:VAL485
|
4.5
|
20.8
|
1.0
|
CG1
|
C:VAL485
|
4.6
|
16.0
|
1.0
|
CB
|
B:VAL485
|
4.6
|
19.0
|
1.0
|
CB
|
C:VAL485
|
4.7
|
19.2
|
1.0
|
O
|
A:VAL485
|
4.7
|
26.9
|
1.0
|
O
|
B:VAL485
|
4.8
|
26.5
|
1.0
|
O
|
C:VAL485
|
4.9
|
26.1
|
1.0
|
OD1
|
A:ASN488
|
5.0
|
18.9
|
1.0
|
|
Chlorine binding site 2 out
of 4 in 2wps
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Chlorine Binding Sites List in 2wps
Chlorine binding site 2 out
of 4 in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1555
b:24.8
occ:1.00
|
ND2
|
B:ASN495
|
3.0
|
15.6
|
1.0
|
ND2
|
C:ASN495
|
3.1
|
15.1
|
1.0
|
ND2
|
A:ASN495
|
3.2
|
14.9
|
1.0
|
CB
|
B:ASN495
|
3.6
|
18.9
|
1.0
|
CB
|
C:ASN495
|
3.7
|
19.2
|
1.0
|
CG
|
B:ASN495
|
3.8
|
23.1
|
1.0
|
CB
|
A:ASN495
|
3.8
|
19.2
|
1.0
|
CG
|
C:ASN495
|
3.9
|
22.8
|
1.0
|
CG
|
A:ASN495
|
4.0
|
22.9
|
1.0
|
CG1
|
C:ILE492
|
4.3
|
20.3
|
1.0
|
CG1
|
A:ILE492
|
4.3
|
20.4
|
1.0
|
CG1
|
B:ILE492
|
4.4
|
20.1
|
1.0
|
CA
|
C:ILE492
|
4.4
|
19.8
|
1.0
|
CA
|
A:ILE492
|
4.4
|
19.7
|
1.0
|
CA
|
B:ILE492
|
4.4
|
20.0
|
1.0
|
CG2
|
C:ILE492
|
4.7
|
13.0
|
1.0
|
CB
|
C:ILE492
|
4.7
|
21.4
|
1.0
|
CG2
|
A:ILE492
|
4.7
|
12.4
|
1.0
|
CB
|
A:ILE492
|
4.7
|
21.4
|
1.0
|
O
|
C:ILE492
|
4.7
|
23.4
|
1.0
|
O
|
A:ILE492
|
4.8
|
23.2
|
1.0
|
O
|
B:ILE492
|
4.8
|
23.3
|
1.0
|
CB
|
B:ILE492
|
4.8
|
21.2
|
1.0
|
OD1
|
B:ASN495
|
5.0
|
25.2
|
1.0
|
CG2
|
B:ILE492
|
5.0
|
12.2
|
1.0
|
|
Chlorine binding site 3 out
of 4 in 2wps
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Chlorine Binding Sites List in 2wps
Chlorine binding site 3 out
of 4 in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1556
b:27.2
occ:1.00
|
ND2
|
C:ASN509
|
3.0
|
26.6
|
1.0
|
ND2
|
B:ASN509
|
3.1
|
26.9
|
1.0
|
ND2
|
A:ASN509
|
3.2
|
26.9
|
1.0
|
CB
|
C:ASN509
|
3.6
|
22.2
|
1.0
|
CB
|
A:ASN509
|
3.6
|
21.7
|
1.0
|
CB
|
B:ASN509
|
3.8
|
22.3
|
1.0
|
CG
|
C:ASN509
|
3.8
|
26.3
|
1.0
|
CG
|
A:ASN509
|
3.9
|
26.5
|
1.0
|
CG
|
B:ASN509
|
3.9
|
26.5
|
1.0
|
CA
|
A:ILE506
|
4.3
|
22.4
|
1.0
|
CG1
|
A:ILE506
|
4.4
|
29.2
|
1.0
|
CG2
|
A:ILE506
|
4.4
|
13.7
|
1.0
|
CA
|
C:ILE506
|
4.4
|
22.4
|
1.0
|
CG1
|
C:ILE506
|
4.6
|
29.4
|
1.0
|
CG1
|
B:ILE506
|
4.6
|
29.4
|
1.0
|
CB
|
A:ILE506
|
4.6
|
25.0
|
1.0
|
CA
|
B:ILE506
|
4.6
|
22.3
|
1.0
|
CG2
|
C:ILE506
|
4.6
|
14.3
|
1.0
|
CG2
|
B:ILE506
|
4.7
|
13.6
|
1.0
|
O
|
A:ILE506
|
4.7
|
26.1
|
1.0
|
CB
|
C:ILE506
|
4.8
|
25.0
|
1.0
|
O
|
C:ILE506
|
4.8
|
27.1
|
1.0
|
CB
|
B:ILE506
|
4.9
|
25.0
|
1.0
|
O
|
B:ILE506
|
5.0
|
27.1
|
1.0
|
|
Chlorine binding site 4 out
of 4 in 2wps
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Chlorine Binding Sites List in 2wps
Chlorine binding site 4 out
of 4 in the Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion)
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Salmonella Enterica Sada 483-523 Fused to GCN4 Adaptors ( SADAK3B-V2, Out-of-Register Fusion) within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1554
b:27.1
occ:1.00
|
ND2
|
C:ASN502
|
3.0
|
11.5
|
1.0
|
ND2
|
B:ASN502
|
3.3
|
11.6
|
1.0
|
ND2
|
A:ASN502
|
3.3
|
11.6
|
1.0
|
CB
|
C:ASN502
|
3.7
|
21.4
|
1.0
|
CB
|
A:ASN502
|
3.8
|
21.2
|
1.0
|
CG
|
C:ASN502
|
3.9
|
15.6
|
1.0
|
CB
|
B:ASN502
|
3.9
|
21.4
|
1.0
|
CG
|
A:ASN502
|
4.0
|
15.7
|
1.0
|
CG
|
B:ASN502
|
4.1
|
16.1
|
1.0
|
CA
|
A:ILE499
|
4.1
|
20.6
|
1.0
|
CG1
|
A:ILE499
|
4.3
|
23.1
|
1.0
|
CA
|
C:ILE499
|
4.3
|
20.6
|
1.0
|
CA
|
B:ILE499
|
4.4
|
20.6
|
1.0
|
CG1
|
C:ILE499
|
4.4
|
23.0
|
1.0
|
CG1
|
B:ILE499
|
4.4
|
22.9
|
1.0
|
CG2
|
A:ILE499
|
4.4
|
9.9
|
1.0
|
O
|
A:ILE499
|
4.5
|
24.5
|
1.0
|
CB
|
A:ILE499
|
4.5
|
20.2
|
1.0
|
CG2
|
B:ILE499
|
4.6
|
10.1
|
1.0
|
CG2
|
C:ILE499
|
4.7
|
10.0
|
1.0
|
O
|
C:ILE499
|
4.7
|
24.9
|
1.0
|
CB
|
C:ILE499
|
4.7
|
19.9
|
1.0
|
CB
|
B:ILE499
|
4.7
|
20.1
|
1.0
|
C
|
A:ILE499
|
4.8
|
21.6
|
1.0
|
O
|
B:ILE499
|
4.9
|
25.0
|
1.0
|
|
Reference:
M.D.Hartmann,
O.Ridderbusch,
K.Zeth,
R.Albrecht,
O.Testa,
D.N.Woolfson,
G.Sauer,
S.Dunin-Horkawicz,
A.N.Lupas,
B.H.Alvarez.
A Coiled-Coil Motif That Sequesters Ions to the Hydrophobic Core. Proc.Natl.Acad.Sci.Usa V. 106 16950 2009.
ISSN: ISSN 0027-8424
PubMed: 19805097
DOI: 10.1073/PNAS.0907256106
Page generated: Sat Jul 20 13:12:44 2024
|