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Chlorine in PDB 2x0a: Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15

Enzymatic activity of Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15

All present enzymatic activity of Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15:
3.2.1.17;

Protein crystallography data

The structure of Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15, PDB code: 2x0a was solved by J.Jakoncic, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.30 / 1.52
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.207, 77.207, 37.767, 90.00, 90.00, 90.00
R / Rfree (%) 14.6 / 19.9

Other elements in 2x0a:

The structure of Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15 also contains other interesting chemical elements:

Sodium (Na) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15 (pdb code 2x0a). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 2 binding sites of Chlorine where determined in the Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15, PDB code: 2x0a:
Jump to Chlorine binding site number: 1; 2;

Chlorine binding site 1 out of 2 in 2x0a

Go back to Chlorine Binding Sites List in 2x0a
Chlorine binding site 1 out of 2 in the Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1130

b:16.4
occ:1.00
 OH A:TYR23 2.9 8.9 1.0
O A:HOH2026 3.2 11.8 1.0
CZ A:TYR23 3.6 6.6 1.0
CE2 A:TYR23 3.7 6.5 1.0
CA A:GLY104 4.1 8.6 1.0
O A:ARG21 4.4 10.0 1.0
N A:GLY104 4.7 9.4 1.0
CE1 A:TYR23 4.9 7.9 1.0
CD2 A:TYR23 4.9 7.0 1.0

Chlorine binding site 2 out of 2 in 2x0a

Go back to Chlorine Binding Sites List in 2x0a
Chlorine binding site 2 out of 2 in the Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Mpd-Lysozyme Structure at 55.5 Kev Using A Trixxel Csi-Asi Based Digital Imager and the New Esrf U22 Undulator Source at ID15 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1131

b:16.0
occ:1.00
 OG A:SER24 3.0 11.3 1.0
N A:GLY26 3.1 8.1 1.0
CA A:GLY26 3.5 7.6 1.0
CB A:SER24 3.5 9.3 1.0
CA A:GLN121 3.6 14.3 1.0
CD1 A:ILE124 3.8 17.8 1.0
N A:GLN121 3.9 14.1 1.0
CB A:GLN121 4.0 15.7 1.0
N A:LEU25 4.1 8.7 1.0
CG1 A:ILE124 4.2 14.6 1.0
CG A:GLN121 4.2 19.4 1.0
C A:SER24 4.2 9.1 1.0
C A:LEU25 4.3 8.2 1.0
C A:VAL120 4.3 12.8 1.0
O A:VAL120 4.3 12.9 1.0
CG2 A:VAL120 4.4 11.8 1.0
CA A:SER24 4.5 8.8 1.0
C A:GLY26 4.6 7.4 1.0
CA A:LEU25 4.6 7.7 1.0
N A:ASN27 4.7 6.6 1.0
O A:SER24 4.7 9.1 1.0
C A:GLN121 4.9 13.9 1.0
CB A:LEU25 5.0 7.5 1.0

Reference:

J.Jakoncic, J.Daniels, M.D.Michiel, V.Honkimaki, V.Stojanoff. A 75 Seconds Macromolecule Structure at 55.5 Kev To Be Published.
Page generated: Sat Jul 20 13:26:29 2024

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