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Chlorine in PDB 2x0r: R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform)

Enzymatic activity of R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform)

All present enzymatic activity of R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform):
1.1.1.37;

Protein crystallography data

The structure of R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform), PDB code: 2x0r was solved by A.Irimia, C.Ebel, F.M.D.Vellieux, S.B.Richard, L.W.Cosenza, G.Zaccai, D.Madern, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.50 / 2.92
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 115.360, 125.910, 125.840, 90.00, 90.00, 90.00
R / Rfree (%) 18.4 / 28.6

Other elements in 2x0r:

The structure of R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform) also contains other interesting chemical elements:

Sodium (Na) 5 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform) (pdb code 2x0r). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 4 binding sites of Chlorine where determined in the R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform), PDB code: 2x0r:
Jump to Chlorine binding site number: 1; 2; 3; 4;

Chlorine binding site 1 out of 4 in 2x0r

Go back to Chlorine Binding Sites List in 2x0r
Chlorine binding site 1 out of 4 in the R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1001

b:30.9
occ:1.00
 N A:ASP306 3.0 62.4 1.0
NZ A:LYS205 3.1 51.6 1.0
CB A:ASP306 3.4 56.6 1.0
CE A:LYS205 3.8 46.2 1.0
CA A:ASP306 3.8 58.6 1.0
CA A:TRP305 3.9 47.2 1.0
C A:TRP305 3.9 54.9 1.0
CB A:TRP305 4.2 36.2 1.0
O A:ASP306 4.4 50.2 1.0
C A:ASP306 4.6 57.3 1.0
CG A:ASP306 4.8 63.5 1.0
CG A:TRP305 5.0 49.0 1.0
O A:GLU304 5.0 61.4 1.0

Chlorine binding site 2 out of 4 in 2x0r

Go back to Chlorine Binding Sites List in 2x0r
Chlorine binding site 2 out of 4 in the R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1004

b:0.5
occ:1.00
 NH1 A:ARG252 2.5 45.2 1.0
OE1 A:GLU259 2.6 47.2 1.0
NH2 A:ARG252 2.8 30.2 1.0
CZ A:ARG252 3.1 35.7 1.0
CA A:HIS256 3.5 25.5 1.0
O A:ALA255 3.6 35.5 1.0
NE A:ARG43 3.6 25.1 0.5
CD A:GLU259 3.7 37.5 1.0
CB A:GLU259 3.9 28.8 1.0
N A:HIS256 3.9 29.6 1.0
C A:ALA255 4.0 29.5 1.0
CD A:ARG43 4.0 24.7 0.5
CG A:ARG43 4.0 28.6 0.5
CB A:HIS256 4.0 18.9 1.0
CG A:ARG43 4.1 29.5 0.5
CZ A:ARG43 4.1 23.2 0.5
CD A:ARG43 4.3 24.7 0.5
NE A:ARG252 4.4 32.2 1.0
NH2 A:ARG43 4.4 20.4 0.5
CG A:GLU259 4.4 29.9 1.0
CD2 A:HIS256 4.4 23.4 1.0
CG A:HIS256 4.4 26.3 1.0
OE2 A:GLU259 4.5 35.4 1.0
C A:HIS256 4.5 28.4 1.0
O A:HIS256 4.6 22.9 1.0
NE A:ARG43 4.8 29.9 0.5
O B:HOH2009 4.9 15.0 1.0
NH1 A:ARG43 4.9 18.4 0.5
CB A:ALA255 5.0 18.5 1.0

Chlorine binding site 3 out of 4 in 2x0r

Go back to Chlorine Binding Sites List in 2x0r
Chlorine binding site 3 out of 4 in the R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1002

b:61.7
occ:1.00
 N B:ASP306 3.2 41.9 1.0
NZ B:LYS205 3.6 48.3 1.0
CB B:ASP306 3.7 59.2 1.0
CE B:LYS205 3.9 54.3 1.0
CA B:ASP306 4.0 50.5 1.0
CA B:TRP305 4.1 35.2 1.0
C B:TRP305 4.1 45.0 1.0
CB B:TRP305 4.4 35.6 1.0
O B:ASP306 4.4 55.0 1.0
C B:ASP306 4.7 53.4 1.0
CG B:TRP305 4.9 38.1 1.0

Chlorine binding site 4 out of 4 in 2x0r

Go back to Chlorine Binding Sites List in 2x0r
Chlorine binding site 4 out of 4 in the R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform)


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of R207S, R292S Mutant of Malate Dehydrogenase From the Halophilic Archeon Haloarcula Marismortui (Holoform) within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Cl1005

b:0.4
occ:1.00
 OE1 B:GLU259 2.7 38.5 1.0
NH1 B:ARG252 2.9 48.4 1.0
CA B:HIS256 3.4 17.5 1.0
N B:HIS256 3.4 16.6 1.0
C B:ALA255 3.4 9.9 1.0
O B:ALA255 3.4 5.7 1.0
NH2 B:ARG252 3.4 40.3 1.0
CZ B:ARG252 3.4 44.4 1.0
NE B:ARG43 3.6 38.1 1.0
CB B:GLU259 3.6 35.0 1.0
CB B:ALA255 3.8 4.8 1.0
CD B:GLU259 3.8 40.1 1.0
O B:HOH2059 3.9 28.2 1.0
CG B:ARG43 3.9 29.5 1.0
CA B:ALA255 4.2 11.8 1.0
CZ B:ARG43 4.2 56.4 1.0
CD B:ARG43 4.2 28.4 1.0
NH2 B:ARG43 4.3 63.8 1.0
CB B:HIS256 4.3 22.1 1.0
CG B:GLU259 4.3 41.0 1.0
C B:HIS256 4.4 19.3 1.0
O B:HIS256 4.5 17.8 1.0
ND1 B:HIS256 4.5 39.9 1.0
NE B:ARG252 4.6 43.4 1.0
CB B:ARG43 4.8 31.0 1.0
O B:ARG252 4.9 19.0 1.0
OE2 B:GLU259 4.9 44.1 1.0
CA B:GLU259 4.9 28.3 1.0
CG B:HIS256 4.9 32.1 1.0
N B:GLU259 4.9 33.1 1.0

Reference:

A.Irimia, C.Ebel, D.Madern, S.B.Richard, L.W.Cosenza, G.Zaccai, F.M.D.Vellieux. The Oligomeric States of Haloarcula Marismortui Malate Dehydrogenase Are Modulated By Solvent Components As Shown By Crystallographic and Biochemical Studies J.Mol.Biol. V. 326 859 2003.
ISSN: ISSN 0022-2836
PubMed: 12581646
DOI: 10.1016/S0022-2836(02)01450-X
Page generated: Sat Jul 20 13:26:35 2024

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