Chlorine in PDB 2x64: Glutathione-S-Transferase From Xylella Fastidiosa
Protein crystallography data
The structure of Glutathione-S-Transferase From Xylella Fastidiosa, PDB code: 2x64
was solved by
J.R.C.Muniz,
N.C.Rodrigues,
L.Bleicher,
R.F.Travensolo,
W.Garcia,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
33.67 /
2.30
|
Space group
|
P 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
47.670,
87.890,
90.780,
116.53,
99.33,
94.49
|
R / Rfree (%)
|
16.67 /
21.91
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Glutathione-S-Transferase From Xylella Fastidiosa
(pdb code 2x64). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 6 binding sites of Chlorine where determined in the
Glutathione-S-Transferase From Xylella Fastidiosa, PDB code: 2x64:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
6;
Chlorine binding site 1 out
of 6 in 2x64
Go back to
Chlorine Binding Sites List in 2x64
Chlorine binding site 1 out
of 6 in the Glutathione-S-Transferase From Xylella Fastidiosa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Glutathione-S-Transferase From Xylella Fastidiosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1206
b:60.1
occ:1.00
|
O
|
B:HOH2029
|
2.9
|
44.9
|
1.0
|
CH2
|
A:TRP94
|
3.8
|
33.2
|
1.0
|
CZ2
|
A:TRP94
|
4.0
|
33.1
|
1.0
|
CZ3
|
A:TRP94
|
4.0
|
33.4
|
1.0
|
CE2
|
A:TRP94
|
4.2
|
33.9
|
1.0
|
O
|
B:HOH2025
|
4.2
|
48.9
|
1.0
|
OG1
|
B:THR60
|
4.2
|
32.5
|
1.0
|
CE3
|
A:TRP94
|
4.2
|
32.5
|
1.0
|
CD1
|
A:PHE97
|
4.3
|
31.7
|
1.0
|
CB
|
A:PHE97
|
4.3
|
28.9
|
1.0
|
CD2
|
A:TRP94
|
4.3
|
30.5
|
1.0
|
NE2
|
B:GLN61
|
4.3
|
21.2
|
1.0
|
O
|
A:ARG93
|
4.4
|
30.5
|
1.0
|
CG
|
A:PHE97
|
4.5
|
30.0
|
1.0
|
NE
|
A:ARG93
|
4.6
|
42.1
|
1.0
|
CG
|
B:GLN61
|
4.7
|
24.8
|
1.0
|
CG
|
A:ARG93
|
4.7
|
29.5
|
1.0
|
O
|
B:HOH2028
|
4.9
|
43.2
|
1.0
|
NE1
|
A:TRP94
|
4.9
|
33.0
|
1.0
|
C
|
A:ARG93
|
4.9
|
32.3
|
1.0
|
|
Chlorine binding site 2 out
of 6 in 2x64
Go back to
Chlorine Binding Sites List in 2x64
Chlorine binding site 2 out
of 6 in the Glutathione-S-Transferase From Xylella Fastidiosa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Glutathione-S-Transferase From Xylella Fastidiosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Cl1206
b:66.6
occ:1.00
|
O
|
D:HOH2030
|
2.9
|
33.4
|
1.0
|
O
|
D:HOH2009
|
3.8
|
48.7
|
1.0
|
NE2
|
D:GLN61
|
3.9
|
25.8
|
1.0
|
OG1
|
D:THR60
|
4.0
|
36.9
|
1.0
|
O
|
D:HOH2019
|
4.2
|
49.0
|
1.0
|
O
|
C:ARG93
|
4.3
|
30.9
|
1.0
|
CZ2
|
C:TRP94
|
4.4
|
34.3
|
1.0
|
CH2
|
C:TRP94
|
4.4
|
35.7
|
1.0
|
CB
|
C:PHE97
|
4.4
|
29.7
|
1.0
|
CG
|
D:GLN61
|
4.4
|
25.6
|
1.0
|
CZ3
|
C:TRP94
|
4.5
|
33.5
|
1.0
|
CE2
|
C:TRP94
|
4.5
|
33.3
|
1.0
|
CD1
|
C:PHE97
|
4.5
|
36.8
|
1.0
|
O
|
D:HOH2021
|
4.5
|
43.4
|
1.0
|
NE
|
C:ARG93
|
4.6
|
34.2
|
1.0
|
CE3
|
C:TRP94
|
4.6
|
29.9
|
1.0
|
CD2
|
C:TRP94
|
4.6
|
28.3
|
1.0
|
CG
|
C:ARG93
|
4.6
|
37.4
|
1.0
|
CD
|
D:GLN61
|
4.7
|
34.4
|
1.0
|
CG
|
C:PHE97
|
4.7
|
33.2
|
1.0
|
C
|
C:ARG93
|
4.8
|
29.5
|
1.0
|
OG
|
D:SER46
|
4.9
|
70.7
|
1.0
|
|
Chlorine binding site 3 out
of 6 in 2x64
Go back to
Chlorine Binding Sites List in 2x64
Chlorine binding site 3 out
of 6 in the Glutathione-S-Transferase From Xylella Fastidiosa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Glutathione-S-Transferase From Xylella Fastidiosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Cl1206
b:73.7
occ:1.00
|
O
|
C:HOH2036
|
2.8
|
34.8
|
1.0
|
O
|
C:HOH2009
|
3.4
|
53.5
|
1.0
|
CG
|
D:ARG93
|
3.6
|
23.2
|
1.0
|
NE
|
D:ARG93
|
3.6
|
31.8
|
1.0
|
CE2
|
D:TRP94
|
3.7
|
29.5
|
1.0
|
CZ2
|
D:TRP94
|
3.8
|
30.1
|
1.0
|
CD2
|
D:TRP94
|
4.0
|
23.9
|
1.0
|
OG1
|
C:THR60
|
4.0
|
31.5
|
1.0
|
CH2
|
D:TRP94
|
4.0
|
30.7
|
1.0
|
CD
|
D:ARG93
|
4.1
|
27.0
|
1.0
|
O
|
D:ARG93
|
4.1
|
22.5
|
1.0
|
CE3
|
D:TRP94
|
4.2
|
26.2
|
1.0
|
NE1
|
D:TRP94
|
4.2
|
27.9
|
1.0
|
CZ3
|
D:TRP94
|
4.2
|
29.1
|
1.0
|
CB
|
D:ARG93
|
4.2
|
20.9
|
1.0
|
C
|
D:ARG93
|
4.3
|
24.1
|
1.0
|
CG
|
C:GLN61
|
4.6
|
27.3
|
1.0
|
CZ
|
D:ARG93
|
4.6
|
40.0
|
1.0
|
CG
|
D:TRP94
|
4.6
|
23.1
|
1.0
|
CD1
|
D:TRP94
|
4.7
|
26.6
|
1.0
|
NE2
|
C:GLN61
|
4.7
|
18.8
|
1.0
|
O
|
C:HOH2025
|
4.7
|
60.0
|
1.0
|
CB
|
D:PHE97
|
4.7
|
23.3
|
1.0
|
N
|
D:TRP94
|
4.8
|
21.5
|
1.0
|
NH2
|
D:ARG93
|
4.8
|
30.8
|
1.0
|
CA
|
D:ARG93
|
4.9
|
21.9
|
1.0
|
O
|
D:HOH2016
|
4.9
|
51.0
|
1.0
|
|
Chlorine binding site 4 out
of 6 in 2x64
Go back to
Chlorine Binding Sites List in 2x64
Chlorine binding site 4 out
of 6 in the Glutathione-S-Transferase From Xylella Fastidiosa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Glutathione-S-Transferase From Xylella Fastidiosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Cl1206
b:64.8
occ:1.00
|
O
|
F:HOH2018
|
2.9
|
45.2
|
1.0
|
CD
|
E:ARG93
|
3.7
|
28.3
|
0.5
|
CG
|
E:ARG93
|
3.9
|
30.6
|
0.5
|
O
|
E:ARG93
|
4.0
|
28.2
|
0.5
|
OG1
|
F:THR60
|
4.0
|
40.4
|
1.0
|
CB
|
E:PHE97
|
4.1
|
21.6
|
1.0
|
CH2
|
E:TRP94
|
4.1
|
28.6
|
1.0
|
NE2
|
F:GLN61
|
4.1
|
23.7
|
1.0
|
O
|
E:ARG93
|
4.1
|
27.7
|
0.5
|
CD1
|
E:PHE97
|
4.1
|
25.5
|
1.0
|
CZ2
|
E:TRP94
|
4.2
|
28.8
|
1.0
|
CZ3
|
E:TRP94
|
4.2
|
26.7
|
1.0
|
CE3
|
E:TRP94
|
4.3
|
24.4
|
1.0
|
CE2
|
E:TRP94
|
4.3
|
28.8
|
1.0
|
CG
|
E:PHE97
|
4.4
|
22.2
|
1.0
|
CD2
|
E:TRP94
|
4.4
|
23.8
|
1.0
|
CG
|
F:GLN61
|
4.4
|
28.0
|
1.0
|
O
|
E:HOH2071
|
4.5
|
34.0
|
1.0
|
C
|
E:ARG93
|
4.6
|
28.4
|
0.5
|
O
|
F:HOH2017
|
4.7
|
53.2
|
1.0
|
C
|
E:ARG93
|
4.7
|
28.1
|
0.5
|
CD
|
F:GLN61
|
4.8
|
30.0
|
1.0
|
NE
|
E:ARG93
|
4.8
|
54.3
|
0.5
|
CB
|
E:ARG93
|
4.9
|
23.2
|
0.5
|
CB
|
E:ARG93
|
4.9
|
24.8
|
0.5
|
CG
|
E:ARG93
|
4.9
|
36.4
|
0.5
|
NE
|
E:ARG93
|
5.0
|
19.3
|
0.5
|
|
Chlorine binding site 5 out
of 6 in 2x64
Go back to
Chlorine Binding Sites List in 2x64
Chlorine binding site 5 out
of 6 in the Glutathione-S-Transferase From Xylella Fastidiosa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Glutathione-S-Transferase From Xylella Fastidiosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Cl1206
b:76.0
occ:1.00
|
O
|
E:HOH2030
|
2.8
|
33.0
|
1.0
|
NE
|
F:ARG93
|
3.1
|
32.9
|
1.0
|
CG
|
F:ARG93
|
3.5
|
29.7
|
1.0
|
OG1
|
E:THR60
|
3.6
|
29.3
|
1.0
|
O
|
E:HOH2029
|
3.7
|
34.2
|
1.0
|
CD
|
F:ARG93
|
3.7
|
34.6
|
1.0
|
CE2
|
F:TRP94
|
3.9
|
21.2
|
1.0
|
CZ2
|
F:TRP94
|
3.9
|
21.1
|
1.0
|
CZ
|
F:ARG93
|
4.0
|
33.5
|
1.0
|
O
|
E:HOH2022
|
4.1
|
50.2
|
1.0
|
NH2
|
F:ARG93
|
4.1
|
28.4
|
1.0
|
CB
|
F:ARG93
|
4.1
|
25.1
|
1.0
|
NE1
|
F:TRP94
|
4.2
|
20.6
|
1.0
|
CD2
|
F:TRP94
|
4.3
|
16.4
|
1.0
|
CH2
|
F:TRP94
|
4.4
|
20.6
|
1.0
|
O
|
F:ARG93
|
4.4
|
25.9
|
1.0
|
O
|
F:HOH2014
|
4.5
|
55.0
|
1.0
|
C
|
F:ARG93
|
4.5
|
25.6
|
1.0
|
CE3
|
F:TRP94
|
4.7
|
17.2
|
1.0
|
CZ3
|
F:TRP94
|
4.7
|
18.8
|
1.0
|
CG
|
E:GLN61
|
4.7
|
13.1
|
1.0
|
CD1
|
F:TRP94
|
4.8
|
20.9
|
1.0
|
CG
|
F:TRP94
|
4.9
|
16.9
|
1.0
|
CA
|
F:ARG93
|
4.9
|
24.4
|
1.0
|
N
|
F:TRP94
|
5.0
|
20.1
|
1.0
|
CB
|
E:THR60
|
5.0
|
27.8
|
1.0
|
|
Chlorine binding site 6 out
of 6 in 2x64
Go back to
Chlorine Binding Sites List in 2x64
Chlorine binding site 6 out
of 6 in the Glutathione-S-Transferase From Xylella Fastidiosa
Mono view
Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 6 of Glutathione-S-Transferase From Xylella Fastidiosa within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1206
b:63.5
occ:1.00
|
NE2
|
A:GLN61
|
3.6
|
25.1
|
1.0
|
OG1
|
A:THR60
|
4.0
|
46.7
|
1.0
|
CD1
|
B:PHE97
|
4.0
|
38.1
|
1.0
|
CB
|
B:PHE97
|
4.1
|
32.9
|
1.0
|
O
|
B:ARG93
|
4.3
|
29.7
|
1.0
|
CG
|
B:PHE97
|
4.4
|
34.8
|
1.0
|
CG
|
A:GLN61
|
4.4
|
30.5
|
1.0
|
CD
|
A:GLN61
|
4.5
|
34.5
|
1.0
|
CH2
|
B:TRP94
|
4.6
|
30.4
|
1.0
|
CZ3
|
B:TRP94
|
4.6
|
28.1
|
1.0
|
CZ2
|
B:TRP94
|
4.7
|
31.7
|
1.0
|
CE3
|
B:TRP94
|
4.8
|
25.8
|
1.0
|
OG
|
A:SER46
|
4.9
|
78.5
|
1.0
|
CE2
|
B:TRP94
|
4.9
|
31.8
|
1.0
|
NE
|
B:ARG93
|
4.9
|
43.5
|
1.0
|
CD2
|
B:TRP94
|
4.9
|
25.9
|
1.0
|
CE1
|
B:PHE97
|
5.0
|
39.5
|
1.0
|
C
|
B:ARG93
|
5.0
|
29.6
|
1.0
|
CA
|
B:PHE97
|
5.0
|
29.9
|
1.0
|
|
Reference:
N.C.Rodrigues,
J.R.C.Muniz,
L.Bleicher,
W.Garcia,
R.F.Travensolo,
A.P.Ulian-De-Araujo,
E.Carrilho,
R.Garratt.
Structural and Biophysical Characterization of the Recombinant Glutathione-S-Transferase From Xylella To Be Published.
Page generated: Sat Jul 20 13:31:06 2024
|