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Chlorine in PDB 2xml: Crystal Structure of Human JMJD2C Catalytic Domain

Protein crystallography data

The structure of Crystal Structure of Human JMJD2C Catalytic Domain, PDB code: 2xml was solved by W.W.Yue, C.Gileadi, T.Krojer, A.C.W.Pike, F.Von Delft, S.Ng, L.Carpenter, C.Arrowsmith, J.Weigelt, A.Edwards, C.Bountra, U.Oppermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.572 / 2.55
Space group P 2 21 21
Cell size a, b, c (Å), α, β, γ (°) 88.660, 95.870, 100.690, 90.00, 90.00, 90.00
R / Rfree (%) 19.61 / 25.4

Other elements in 2xml:

The structure of Crystal Structure of Human JMJD2C Catalytic Domain also contains other interesting chemical elements:

Nickel (Ni) 2 atoms
Zinc (Zn) 2 atoms

Chlorine Binding Sites:

The binding sites of Chlorine atom in the Crystal Structure of Human JMJD2C Catalytic Domain (pdb code 2xml). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total only one binding site of Chlorine was determined in the Crystal Structure of Human JMJD2C Catalytic Domain, PDB code: 2xml:

Chlorine binding site 1 out of 1 in 2xml

Go back to Chlorine Binding Sites List in 2xml
Chlorine binding site 1 out of 1 in the Crystal Structure of Human JMJD2C Catalytic Domain


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Crystal Structure of Human JMJD2C Catalytic Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Cl1353

b:16.7
occ:1.00
O A:HOH2079 3.0 7.2 1.0
NE1 A:TRP183 3.2 6.0 1.0
CG A:ASN126 3.6 18.3 1.0
CB A:ASN126 3.6 13.4 1.0
ND2 A:ASN126 3.7 11.5 1.0
CZ2 A:TRP183 3.8 6.2 1.0
CG A:PRO111 3.8 14.7 1.0
CE2 A:TRP183 3.8 6.0 1.0
OD1 A:ASN126 4.0 24.9 1.0
CD A:PRO111 4.2 6.5 1.0
CB A:PRO111 4.2 6.7 1.0
CD1 A:TRP183 4.4 5.8 1.0
O A:HOH2062 4.5 19.4 1.0
O A:HOH2049 4.6 8.7 1.0
O A:LYS122 4.6 13.9 1.0
CD A:LYS184 4.7 12.6 1.0
CB A:LYS122 5.0 7.2 1.0

Reference:

L.Hillringhaus, W.W.Yue, N.R.Rose, S.S.Ng, C.Gileadi, C.Loenarz, S.H.Bello, J.E.Bray, C.J.Schofield, U.Oppermann. Structural and Evolutionary Basis For the Dual Substrate Selectivity of Human KDM4 Histone Demethylase Family. J.Biol.Chem. V. 286 41616 2011.
ISSN: ISSN 0021-9258
PubMed: 21914792
DOI: 10.1074/JBC.M111.283689
Page generated: Sat Dec 12 09:26:22 2020

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