Chlorine in PDB 2xsw: Crystal Structure of Human INPP5E
Enzymatic activity of Crystal Structure of Human INPP5E
All present enzymatic activity of Crystal Structure of Human INPP5E:
3.1.3.36;
Protein crystallography data
The structure of Crystal Structure of Human INPP5E, PDB code: 2xsw
was solved by
L.Tresaugues,
P.Schutz,
C.H.Arrowsmith,
H.Berglund,
C.Bountra,
R.Collins,
A.M.Edwards,
S.Flodin,
A.Flores,
S.Graslund,
M.Hammarstrom,
I.Johansson,
T.Karlberg,
S.Kol,
T.Kotenyova,
E.Kouznetsova,
M.Moche,
T.Nyman,
C.Persson,
H.Schuler,
P.Schutz,
M.I.Siponen,
A.G.Thorsell,
S.Van Der Berg,
E.Wahlberg,
J.Weigelt,
M.Welin,
P.Nordlund,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
48.468 /
1.90
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
50.528,
103.579,
137.545,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
16.49 /
19.47
|
Chlorine Binding Sites:
The binding sites of Chlorine atom in the Crystal Structure of Human INPP5E
(pdb code 2xsw). This binding sites where shown within
5.0 Angstroms radius around Chlorine atom.
In total 5 binding sites of Chlorine where determined in the
Crystal Structure of Human INPP5E, PDB code: 2xsw:
Jump to Chlorine binding site number:
1;
2;
3;
4;
5;
Chlorine binding site 1 out
of 5 in 2xsw
Go back to
Chlorine Binding Sites List in 2xsw
Chlorine binding site 1 out
of 5 in the Crystal Structure of Human INPP5E
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 1 of Crystal Structure of Human INPP5E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1625
b:31.4
occ:1.00
|
N
|
A:SER427
|
3.4
|
23.3
|
1.0
|
NZ
|
A:LYS404
|
3.4
|
27.3
|
1.0
|
OG
|
A:SER427
|
3.6
|
27.0
|
0.5
|
CE
|
A:LYS404
|
3.7
|
22.7
|
1.0
|
CA
|
A:THR426
|
3.8
|
18.1
|
1.0
|
CG2
|
A:VAL398
|
3.8
|
32.8
|
1.0
|
CG2
|
A:THR426
|
3.9
|
23.3
|
1.0
|
C
|
A:THR426
|
4.1
|
22.1
|
1.0
|
CG
|
A:LYS404
|
4.1
|
22.6
|
1.0
|
CB
|
A:SER427
|
4.2
|
26.3
|
0.5
|
CD
|
A:ARG396
|
4.3
|
30.8
|
1.0
|
CB
|
A:SER427
|
4.3
|
26.2
|
0.5
|
CA
|
A:SER427
|
4.3
|
25.6
|
0.5
|
CA
|
A:SER427
|
4.3
|
25.5
|
0.5
|
CB
|
A:THR426
|
4.4
|
24.1
|
1.0
|
CD
|
A:LYS404
|
4.5
|
19.4
|
1.0
|
O
|
A:SER427
|
4.5
|
30.0
|
1.0
|
O
|
A:HOH2209
|
4.6
|
36.7
|
1.0
|
CG1
|
A:VAL398
|
4.6
|
38.1
|
1.0
|
OG1
|
A:THR426
|
4.8
|
25.0
|
1.0
|
CB
|
A:VAL398
|
4.9
|
33.7
|
1.0
|
N
|
A:THR426
|
4.9
|
16.7
|
1.0
|
C
|
A:SER427
|
4.9
|
30.8
|
1.0
|
|
Chlorine binding site 2 out
of 5 in 2xsw
Go back to
Chlorine Binding Sites List in 2xsw
Chlorine binding site 2 out
of 5 in the Crystal Structure of Human INPP5E
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 2 of Crystal Structure of Human INPP5E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1627
b:32.0
occ:1.00
|
OG
|
A:SER391
|
2.8
|
18.3
|
1.0
|
O
|
A:HOH2061
|
2.8
|
32.6
|
1.0
|
O
|
A:HOH2062
|
3.0
|
43.2
|
1.0
|
NH1
|
B:ARG441
|
3.1
|
36.4
|
1.0
|
NH2
|
B:ARG441
|
3.3
|
43.1
|
1.0
|
CB
|
A:SER391
|
3.6
|
19.4
|
1.0
|
CA
|
A:SER391
|
3.6
|
18.1
|
1.0
|
CZ
|
B:ARG441
|
3.6
|
43.8
|
1.0
|
N
|
A:THR392
|
3.7
|
18.6
|
1.0
|
CD2
|
B:LEU437
|
3.8
|
38.0
|
1.0
|
CG2
|
A:VAL447
|
4.1
|
23.7
|
1.0
|
O
|
A:THR392
|
4.2
|
21.6
|
1.0
|
C
|
A:SER391
|
4.2
|
16.1
|
1.0
|
NH1
|
A:ARG450
|
4.3
|
21.1
|
1.0
|
CB
|
A:VAL447
|
4.3
|
24.9
|
1.0
|
CD1
|
B:LEU437
|
4.5
|
36.9
|
1.0
|
O
|
A:CYS390
|
4.6
|
17.6
|
1.0
|
O
|
A:HOH2060
|
4.6
|
49.5
|
1.0
|
CG
|
B:LEU437
|
4.7
|
33.5
|
1.0
|
OG1
|
A:THR392
|
4.8
|
25.7
|
1.0
|
N
|
A:VAL447
|
4.9
|
17.9
|
1.0
|
O
|
A:HOH2106
|
4.9
|
38.6
|
1.0
|
CA
|
A:THR392
|
4.9
|
20.1
|
1.0
|
N
|
A:SER391
|
4.9
|
14.9
|
1.0
|
NE
|
B:ARG441
|
5.0
|
42.1
|
1.0
|
C
|
A:THR392
|
5.0
|
21.4
|
1.0
|
|
Chlorine binding site 3 out
of 5 in 2xsw
Go back to
Chlorine Binding Sites List in 2xsw
Chlorine binding site 3 out
of 5 in the Crystal Structure of Human INPP5E
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 3 of Crystal Structure of Human INPP5E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Cl1628
b:26.7
occ:1.00
|
O
|
A:HOH2072
|
3.0
|
27.0
|
1.0
|
O
|
A:HOH2087
|
3.1
|
38.1
|
1.0
|
N
|
A:GLU340
|
3.2
|
16.2
|
1.0
|
ND1
|
A:HIS424
|
3.2
|
19.7
|
1.0
|
O
|
A:HOH2051
|
3.8
|
37.3
|
1.0
|
CA
|
A:GLN339
|
3.9
|
15.5
|
1.0
|
CB
|
A:HIS424
|
4.0
|
15.3
|
1.0
|
CG2
|
A:VAL370
|
4.0
|
31.8
|
1.0
|
CB
|
A:GLN339
|
4.0
|
18.7
|
1.0
|
CG
|
A:HIS424
|
4.0
|
17.6
|
1.0
|
C
|
A:GLN339
|
4.0
|
15.8
|
1.0
|
CA
|
A:GLU340
|
4.0
|
21.5
|
1.0
|
O
|
A:VAL370
|
4.1
|
21.1
|
1.0
|
N
|
A:LEU371
|
4.1
|
19.4
|
1.0
|
C
|
A:VAL370
|
4.1
|
20.9
|
1.0
|
CB
|
A:LEU371
|
4.2
|
21.7
|
1.0
|
CE1
|
A:HIS424
|
4.3
|
20.7
|
1.0
|
CG
|
A:GLU340
|
4.3
|
24.9
|
1.0
|
CA
|
A:LEU371
|
4.3
|
18.1
|
1.0
|
CD1
|
A:LEU371
|
4.4
|
21.8
|
1.0
|
O
|
A:HOH2073
|
4.6
|
36.2
|
1.0
|
CB
|
A:GLU340
|
4.8
|
22.3
|
1.0
|
CG
|
A:GLN339
|
4.8
|
19.0
|
1.0
|
O
|
A:THR403
|
4.8
|
27.0
|
1.0
|
CB
|
A:VAL370
|
4.9
|
29.9
|
1.0
|
CG
|
A:LEU371
|
4.9
|
25.5
|
1.0
|
CA
|
A:VAL370
|
5.0
|
21.7
|
1.0
|
|
Chlorine binding site 4 out
of 5 in 2xsw
Go back to
Chlorine Binding Sites List in 2xsw
Chlorine binding site 4 out
of 5 in the Crystal Structure of Human INPP5E
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 4 of Crystal Structure of Human INPP5E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1624
b:34.6
occ:1.00
|
N
|
B:SER427
|
3.2
|
26.9
|
1.0
|
CG1
|
B:VAL398
|
3.5
|
44.9
|
1.0
|
CE
|
B:LYS404
|
3.5
|
30.1
|
1.0
|
NZ
|
B:LYS404
|
3.5
|
30.3
|
1.0
|
OG
|
B:SER427
|
3.6
|
49.9
|
1.0
|
CA
|
B:THR426
|
3.7
|
22.3
|
1.0
|
CG2
|
B:THR426
|
3.7
|
35.0
|
1.0
|
C
|
B:THR426
|
3.9
|
25.5
|
1.0
|
CG
|
B:LYS404
|
4.0
|
25.7
|
1.0
|
CA
|
B:SER427
|
4.2
|
32.1
|
1.0
|
CB
|
B:SER427
|
4.2
|
36.3
|
1.0
|
CB
|
B:THR426
|
4.3
|
33.1
|
1.0
|
CB
|
B:VAL398
|
4.3
|
40.0
|
1.0
|
O
|
B:SER427
|
4.4
|
34.5
|
1.0
|
CG2
|
B:VAL398
|
4.4
|
39.2
|
1.0
|
CD
|
B:LYS404
|
4.4
|
24.8
|
1.0
|
CD
|
B:ARG396
|
4.5
|
42.1
|
1.0
|
C
|
B:SER427
|
4.7
|
35.9
|
1.0
|
N
|
B:THR426
|
4.9
|
22.6
|
1.0
|
OG1
|
B:THR426
|
4.9
|
29.2
|
1.0
|
O
|
B:PHE425
|
5.0
|
23.8
|
1.0
|
|
Chlorine binding site 5 out
of 5 in 2xsw
Go back to
Chlorine Binding Sites List in 2xsw
Chlorine binding site 5 out
of 5 in the Crystal Structure of Human INPP5E
 Mono view
 Stereo pair view
|
A full contact list of Chlorine with other atoms in the Cl binding
site number 5 of Crystal Structure of Human INPP5E within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Cl1625
b:27.9
occ:1.00
|
N
|
B:GLU340
|
3.1
|
24.3
|
1.0
|
O
|
B:HOH2068
|
3.2
|
26.5
|
1.0
|
O
|
B:HOH2076
|
3.2
|
45.8
|
1.0
|
ND1
|
B:HIS424
|
3.2
|
21.6
|
1.0
|
O
|
B:HOH2047
|
3.4
|
31.5
|
1.0
|
CA
|
B:GLN339
|
3.9
|
22.0
|
1.0
|
CG2
|
B:VAL370
|
3.9
|
27.6
|
1.0
|
CA
|
B:GLU340
|
3.9
|
23.8
|
1.0
|
C
|
B:GLN339
|
4.0
|
24.7
|
1.0
|
CB
|
B:GLN339
|
4.0
|
21.1
|
1.0
|
CG
|
B:HIS424
|
4.1
|
21.3
|
1.0
|
CB
|
B:HIS424
|
4.1
|
18.5
|
1.0
|
N
|
B:LEU371
|
4.1
|
23.9
|
1.0
|
O
|
B:VAL370
|
4.1
|
24.7
|
1.0
|
C
|
B:VAL370
|
4.1
|
25.7
|
1.0
|
CB
|
B:LEU371
|
4.1
|
23.5
|
1.0
|
CE1
|
B:HIS424
|
4.2
|
24.4
|
1.0
|
CA
|
B:LEU371
|
4.3
|
19.7
|
1.0
|
CG
|
B:GLU340
|
4.4
|
32.8
|
1.0
|
O
|
B:THR403
|
4.5
|
26.1
|
1.0
|
CD1
|
B:LEU371
|
4.5
|
24.5
|
1.0
|
CB
|
B:GLU340
|
4.8
|
29.9
|
1.0
|
CG
|
B:GLN339
|
4.8
|
20.6
|
1.0
|
CB
|
B:VAL370
|
4.9
|
32.6
|
1.0
|
O
|
B:HOH2066
|
4.9
|
33.5
|
1.0
|
CA
|
B:VAL370
|
4.9
|
28.3
|
1.0
|
CG
|
B:LEU371
|
4.9
|
29.1
|
1.0
|
O
|
B:HOH2067
|
4.9
|
31.3
|
1.0
|
|
Reference:
L.Tresaugues,
P.Schutz,
C.H.Arrowsmith,
H.Berglund,
C.Bountra,
R.Collins,
A.M.Edwards,
S.Flodin,
A.Flores,
S.Graslund,
M.Hammarstrom,
I.Johansson,
T.Karlberg,
S.Kol,
T.Kotenyova,
E.Kouznetsova,
M.Moche,
T.Nyman,
C.Persson,
H.Schuler,
M.I.Siponen,
A.G.Thorsell,
S.Van Der Berg,
E.Wahlberg,
J.Weigelt,
M.Welin,
P.Nordlund.
Crystal Structure of Human INPP5E To Be Published.
Page generated: Sat Jul 20 14:10:47 2024
|