Chlorine in PDB 2ybv: Structure of Rubisco From Thermosynechococcus Elongatus

All present enzymatic activity of Structure of Rubisco From Thermosynechococcus Elongatus:
4.1.1.39;

The structure of Structure of Rubisco From Thermosynechococcus Elongatus, PDB code: 2ybv was solved by B.Terlecka, V.Wilhelmi, W.Bialek, B.Gubernator, A.Szczepaniak, E.Hofmann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.84 / 2.30
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	115.480, 163.470, 163.540, 90.00, 108.96, 90.00
R / Rfree (%)	19.577 / 23.167

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 15;

Binding sites:

The binding sites of Chlorine atom in the Structure of Rubisco From Thermosynechococcus Elongatus (pdb code 2ybv). This binding sites where shown within 5.0 Angstroms radius around Chlorine atom.
In total 15 binding sites of Chlorine where determined in the Structure of Rubisco From Thermosynechococcus Elongatus, PDB code: 2ybv:
Jump to Chlorine binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Chlorine binding site 1 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 1 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1460 b:36.1 occ:1.00 NZ A:LYS305 3.5 34.3 1.0 NE2 A:HIS310 3.6 3.3 1.0 NH1 A:ARG134 3.9 7.6 1.0 CD2 A:HIS310 3.9 3.8 1.0 CD A:LYS305 4.1 27.5 1.0 NH2 A:ARG134 4.3 8.8 1.0 CE A:LYS305 4.4 30.0 1.0 CZ A:ARG134 4.5 8.8 1.0 CE1 A:HIS310 4.8 5.0 1.0 CG1 A:VAL341 4.8 11.9 1.0

Chlorine binding site 2 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 2 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ A:Cl1461 b:34.0 occ:1.00 NE A:ARG295 3.6 9.8 1.0 NH2 A:ARG295 3.8 6.5 1.0 ND1 A:HIS327 4.1 10.7 1.0 CB A:HIS327 4.1 8.4 1.0 CZ A:ARG295 4.1 10.6 1.0 OG A:SER379 4.4 28.0 1.0 CG A:HIS327 4.5 9.9 1.0 CG A:ARG295 4.5 4.7 1.0 CD A:ARG295 4.6 7.2 1.0 O I:HOH2020 4.7 13.8 1.0 CA A:GLY329 4.7 23.0 1.0 N A:GLY329 4.7 18.6 1.0 NE2 A:HIS298 4.8 5.5 1.0

Chlorine binding site 3 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 3 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1460 b:38.4 occ:1.00 O C:HOH2099 3.0 28.6 1.0 NE2 C:HIS310 3.5 4.2 1.0 NZ C:LYS305 3.6 34.4 1.0 NH1 C:ARG134 3.8 7.7 1.0 CD2 C:HIS310 3.9 3.7 1.0 CD C:LYS305 4.2 27.3 1.0 NH2 C:ARG134 4.3 8.9 1.0 CE C:LYS305 4.5 29.8 1.0 CZ C:ARG134 4.6 8.7 1.0 CE1 C:HIS310 4.8 4.7 1.0 CG1 C:VAL341 4.8 12.2 1.0

Chlorine binding site 4 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 4 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ C:Cl1461 b:36.8 occ:1.00 NE C:ARG295 3.4 10.1 1.0 NH2 C:ARG295 3.6 7.2 1.0 CZ C:ARG295 4.0 10.4 1.0 ND1 C:HIS327 4.0 10.2 1.0 CB C:HIS327 4.1 8.4 1.0 CG C:ARG295 4.4 4.8 1.0 CG C:HIS327 4.5 9.8 1.0 OG C:SER379 4.5 28.0 1.0 CD C:ARG295 4.5 7.2 1.0 NE2 C:HIS298 4.7 5.6 1.0 O C:HOH2061 4.7 19.8 1.0 N C:GLY329 4.8 18.7 1.0 CA C:GLY329 4.8 22.8 1.0

Chlorine binding site 5 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 5 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ E:Cl1460 b:34.1 occ:1.00 NE E:ARG295 3.4 10.0 1.0 NH2 E:ARG295 3.6 6.8 1.0 CZ E:ARG295 4.0 10.1 1.0 ND1 E:HIS327 4.1 10.7 1.0 CB E:HIS327 4.2 8.5 1.0 O E:HOH2089 4.3 13.6 1.0 CG E:ARG295 4.3 5.1 1.0 CD E:ARG295 4.4 7.5 1.0 NE2 E:HIS298 4.5 5.1 1.0 CG E:HIS327 4.5 9.9 1.0 OG E:SER379 4.7 28.0 1.0 CA E:GLY329 4.9 23.0 1.0 N E:GLY329 4.9 18.7 1.0

Chlorine binding site 6 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 6 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl1460 b:33.8 occ:1.00 NE2 G:HIS310 3.4 3.6 1.0 NZ G:LYS305 3.7 34.1 1.0 CD2 G:HIS310 3.8 2.8 1.0 NH1 G:ARG134 4.1 8.3 1.0 NH2 G:ARG134 4.4 8.5 1.0 CD G:LYS305 4.4 27.2 1.0 O G:HOH2091 4.5 33.7 1.0 CG1 G:VAL341 4.5 12.4 1.0 CE G:LYS305 4.6 29.9 1.0 CE1 G:HIS310 4.6 5.0 1.0 CZ G:ARG134 4.7 8.5 1.0

Chlorine binding site 7 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 7 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ G:Cl1461 b:30.9 occ:1.00 NE G:ARG295 3.6 9.9 1.0 NH2 G:ARG295 3.8 6.4 1.0 ND1 G:HIS327 4.1 10.6 1.0 CB G:HIS327 4.1 8.3 1.0 CZ G:ARG295 4.2 10.3 1.0 OG G:SER379 4.3 28.1 1.0 CG G:HIS327 4.5 10.4 1.0 CG G:ARG295 4.6 4.5 1.0 CD G:ARG295 4.7 6.8 1.0 CA G:GLY329 4.7 22.9 1.0 O O:HOH2023 4.8 16.0 1.0 N G:GLY329 4.8 18.7 1.0 NE2 G:HIS298 4.9 5.6 1.0

Chlorine binding site 8 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 8 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ I:Cl1460 b:28.2 occ:1.00 O I:HOH2022 3.1 23.1 1.0 NE2 I:HIS310 3.5 3.7 1.0 NZ I:LYS305 3.6 33.9 1.0 NH1 I:ARG134 3.6 8.2 1.0 CD2 I:HIS310 3.7 3.9 1.0 CD I:LYS305 4.2 27.3 1.0 NH2 I:ARG134 4.3 8.3 1.0 CZ I:ARG134 4.4 8.6 1.0 CE I:LYS305 4.5 30.2 1.0 CE1 I:HIS310 4.7 4.8 1.0 CG1 I:VAL341 4.9 12.4 1.0

Chlorine binding site 9 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 9 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ I:Cl1461 b:34.2 occ:1.00 NE I:ARG295 3.6 9.9 1.0 NH2 I:ARG295 3.7 6.6 1.0 CZ I:ARG295 4.1 10.2 1.0 ND1 I:HIS327 4.1 10.7 1.0 CB I:HIS327 4.2 8.7 1.0 OG I:SER379 4.5 28.2 1.0 O A:HOH2026 4.5 13.3 1.0 CG I:HIS327 4.6 9.7 1.0 CG I:ARG295 4.6 5.0 1.0 CD I:ARG295 4.7 7.1 1.0 NE2 I:HIS298 4.7 6.4 1.0 CA I:GLY329 4.8 23.1 1.0 N I:GLY329 4.8 18.8 1.0 O I:SER379 4.9 27.9 1.0

Chlorine binding site 10 out of 15 in the Structure of Rubisco From Thermosynechococcus Elongatus


Mono view


Stereo pair view

A full contact list of Chlorine with other atoms in the Cl binding site number 10 of Structure of Rubisco From Thermosynechococcus Elongatus within 5.0Å range: probe atom residue distance (Å) B Occ K:Cl1460 b:27.8 occ:1.00 NZ K:LYS305 3.5 34.3 1.0 NE2 K:HIS310 3.6 3.6 1.0 O K:HOH2025 3.9 5.3 1.0 NH1 K:ARG134 3.9 8.3 1.0 CD2 K:HIS310 4.0 3.4 1.0 CD K:LYS305 4.1 27.3 1.0 NH2 K:ARG134 4.3 8.0 1.0 CE K:LYS305 4.3 29.9 1.0 CZ K:ARG134 4.6 8.6 1.0 CE1 K:HIS310 4.8 5.0 1.0 CG1 K:VAL341 4.9 12.2 1.0

B.Terlecka, V.Wilhelmi, W.Bialek, B.Gubernator, A.Szczepaniak, E.Hofmann. Structure of Ribulose-1,5-Bisphosphate Carboxylase Oxygenase From Thermosynechococcus Elongatus To Be Published.